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[188780_at] 7TM receptor

Description C06C6.1 /REP_DB=WormBase Gene ID /WP=CE15595 /TR=O18082 /GB=CAB07561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 95      4grp_total > 49      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 3.5
(-2.9)
A 		49.7
(3)
A 		33.5
(0.9)
A 		2.6
(-3)
A 		47
B 3.1
(-3)
A 		4.2
(-0.4)
A 		5.5
(2.8)
A 		5.6
(3)
A 		3
C 6.1
(-1.1)
A 		6.9
(-0.7)
A 		14.7
(3)
A 		2.1
(-3)
A 		13
avr 4.2
(-2.7) 		20.3
(3) 		17.9
(2.1) 		3.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3.3
(-2.8)
A 		10
(-1.7)
A 		3.9
(-2.7)
A 		33.3
(2)
A 		39.5
(3)
A 		37
B 13.9
(-1.1)
A 		3
(-3)
A 		4.8
(-2.7)
A 		34.5
(2.6)
A 		36.9
(3)
A 		23.3
(0.6)
A 		34
C 2.2
(-3)
A 		8.9
(-1)
A 		5.7
(-2)
A 		12.7
(0.2)
A 		22.2
(3)
A 		18.3
(1.8)
A 		20
avr 6.1
(-2.8) 		5.1
(-3) 		6.8
(-2.6) 		17
(-0.2) 		30.8
(3) 		27
(2.1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-2.5)
A 		10.8
(3)
A 		8.8
(1.8)
A 		0.4
(-3)
A 		10
B 1
(-3)
A 		1
(-3)
A 		1.3
(3)
A 		1.2
(1)
A 		0
C 2
(-0.9)
A 		2
(-0.9)
A 		5.1
(3)
A 		0.3
(-3)
A 		5
avr 1.4
(-1.9) 		4.6
(2.3) 		5.1
(3) 		0.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.2
(-2.5)
A 		2.2
(-1.9)
A 		1
(-2.6)
A 		10
(3)
A 		9.6
(2.8)
A 		10
B 4.8
(-1.4)
A 		1
(-3)
A 		1.2
(-2.9)
A 		9.1
(0.5)
A 		15
(3)
A 		8.7
(0.3)
A 		14
C 0.8
(-3)
A 		2.7
(-1.2)
A 		1.4
(-2.4)
A 		2.6
(-1.3)
A 		7.2
(3)
A 		6.1
(2)
A 		6
avr 2
(-2.7) 		1.6
(-3) 		1.6
(-3) 		4.2
(-1.3) 		10.7
(3) 		8.1
(1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13822
Sequence Type Exemplar sequence
Representative Public ID C06C6.1 NCBI
Target Description C06C6.1 /REP_DB=WormBase Gene ID /WP=CE15595 /TR=O18082 /GB=CAB07561.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074618 NCBI Caenorhabditis elegans C06C6.1 (C06C6.1) mRNA, complete cds. 11/11 None
C06C6.1 ENSEMBL cdna:known chromosome:CEL140:V:16013293:16014695:-1 gene:C06C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16013292-16014695(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Ensembl C06C6.1
Entrez Gene 182306 Entrez gene
SwissProt O18082 EMBL-EBI
WormBase CE15595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07667 Hypothetical protein C06C6.1 [Caenorhabditis elegans] emb|CAB07561.1| Hypothetical protein C06C6.1 [Caenorhabditis elegans] ref|NP_507019.1| C06C6.1 [Caenorhabditis elegans] 0.0
blast CAB07659 Hypothetical protein T10C6.2 [Caenorhabditis elegans] ref|NP_507020.1| T10C6.2 [Caenorhabditis elegans] 1.0E-147
blast CAB07554 Hypothetical protein C06C6.2 [Caenorhabditis elegans] ref|NP_507018.1| Seven TM Receptor family member (str-233) [Caenorhabditis elegans] 1.0E-129
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507019.1 5 28-50,63-85,105-127,195-217,256-278
C06C6.1 5 28-50,63-85,105-127,195-217,256-278
Sequence
Target Sequence 
>C. ELEGANS:188780_AT
agcataccactatcccaaaagtcctacccaatttccatggaaaacaaaacagttggattt
gttggagtatacttctacccagaactatctgatggaacaacgacaatcaactgggattct
ttcattggaacatttctttgtgtctgtatactatttaggtccgaatcactcatgctctac
tttgctctgaaatcctacttcgtcacaaagtccctcatgacttccgcctactctgcaaac
ttccaaaagcttcaatggcagatgttctacgcattggtatcccaaacagggattccaatt
cttttcatgcaatttccagtgactctaatctatatcacttgtcttggcaacatttccaca
ctctttttcgggcaacttcagcaattaacgatatccttctaccttgctactgacgctctt
ccaaccattttcatcataaaaccatatcgagcgtttataattgacggtttttcagagaat
gtccggagtttgaaacggcgctgctgcaaaccggataaatttgaaaaccgattggccaag
ctaagcataaccaagtcaacgggctctgctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCATACCACTATCCCAAAAGTCCT 165 75 475 Antisense
CAAAAGTCCTACCCAATTTCCATGG 504 189 490 Antisense
GTTGGAGTATACTTCTACCCAGAAC 115 437 535 Antisense
TTAGGTCCGAATCACTCATGCTCTA 381 667 629 Antisense
GATGTTCTACGCATTGGTATCCCAA 393 409 735 Antisense
TGTCTTGGCAACATTTCCACACTCT 384 559 814 Antisense
ACTCTTTTTCGGGCAACTTCAGCAA 253 101 834 Antisense
AATTAACGATATCCTTCTACCTTGC 696 175 857 Antisense
GTCCGGAGTTTGAAACGGCGCTGCT 279 475 955 Antisense
ACGGCGCTGCTGCAAACCGGATAAA 541 95 969 Antisense
TAACCAAGTCAACGGGCTCTGCTAT 454 637 1022 Antisense
Sequence Source Affymetrix Proprietary Database