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[188778_at]

Description F36D3.7 /REP_DB=WormBase Gene ID /WP=CE15971 /TR=O45465 /GB=CAB04321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 46      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 6.5
(-2.5)
A 		4.3
(-2.9)
A 		3.3
(-3)
A 		44.5
(3)
A 		41
B 2.9
(-3)
A 		3.3
(-2.9)
A 		4.7
(-2.6)
A 		28.9
(3)
A 		26
C 1.7
(-3)
A 		4.7
(1.6)
A 		2.3
(-2.1)
A 		5.6
(3)
A 		4
avr 3.7
(-2.9) 		4.1
(-2.8) 		3.4
(-3) 		26.3
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 8.9
(3)
A 		5.7
(0.3)
A 		1.7
(-3)
A 		4.9
(-0.3)
A 		2.6
(-2.3)
A 		3.4
(-1.6)
A 		7
B 4.3
(-1)
A 		10.7
(3)
A 		2.1
(-2.4)
A 		3.3
(-1.7)
A 		1.2
(-3)
A 		10.5
(2.9)
A 		10
C 1.8
(-3)
A 		4.8
(2.5)
A 		5.1
(3)
A 		2.1
(-2.5)
A 		3.8
(0.6)
A 		3.8
(0.6)
A 		3
avr 5
(0.3) 		7.1
(3) 		3
(-2.3) 		3.4
(-1.8) 		2.5
(-3) 		5.9
(1.4) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.4
(-1.4)
A 		0.9
(-3)
A 		0.9
(-3)
A 		6.5
(3)
A 		6
B 0.9
(-2.9)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		6.2
(3)
A 		5
C 0.6
(-3)
A 		1.3
(3)
A 		0.8
(-1.3)
A 		0.9
(-0.4)
A 		1
avr 1.3
(-2.3) 		1
(-2.8) 		0.9
(-3) 		4.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.6
(1.5)
A 		2
(3)
A 		0.4
(-3)
A 		1.2
(-0)
A 		0.8
(-1.5)
A 		0.8
(-1.5)
A 		2
B 1.5
(-1.2)
A 		3.6
(2.5)
A 		0.5
(-3)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		3.9
(3)
A 		3
C 0.7
(-1.4)
A 		1.5
(3)
A 		1.3
(1.9)
A 		0.4
(-3)
A 		1.2
(1.4)
A 		1.3
(1.9)
A 		1
avr 1.3
(-0.9) 		2.4
(3) 		0.7
(-3) 		0.8
(-2.6) 		0.8
(-2.6) 		2
(1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13751
Sequence Type Exemplar sequence
Representative Public ID F36D3.7 NCBI
Target Description F36D3.7 /REP_DB=WormBase Gene ID /WP=CE15971 /TR=O45465 /GB=CAB04321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F36D3.7 ENSEMBL cdna:known chromosome:CEL140:V:16520765:16522731:1 gene:F36D3.7 None
SNAP00000025149 ENSEMBL cdna:SNAP chromosome:CEL140:V:16520882:16522731:1 None
GENEFINDER00000025164 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16521259:16523153:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16520764-16522731(+) 88.54 100.0
Public Domain and Genome References
Ensembl F36D3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21855 hypothetical protein F36D3.7 - Caenorhabditis elegans 9.0E-97
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 3.0E-58
blast T21855 hypothetical protein F36D3.7 - Caenorhabditis elegans 2.0E-53
blast T21855 hypothetical protein F36D3.7 - Caenorhabditis elegans 6.0E-53
blast CAE61086 Hypothetical protein CBG04839 [Caenorhabditis briggsae] 6.0E-51
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 9.0E-41
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 6.0E-39
blast CAE61086 Hypothetical protein CBG04839 [Caenorhabditis briggsae] 4.0E-37
blast CAE61086 Hypothetical protein CBG04839 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
F36D3.7 5 15-33,45-64,101-123,144-166,220-242
SNAP00000025149 4 27-49,75-97,104-121,149-171
GENEFINDER00000025164 4 29-51,77-99,106-123,151-173
Sequence
Target Sequence 
>C. ELEGANS:188778_AT
gttggaggctttctttttgcactaactattgagtttttcctgggtcagactaaagaaatg
gacgtaatcgtgagtttatctggcatagaagttcatccaattttggcctactatggcttc
agtctctataagtcacttcccaattccgaaccgaagattctcaattggttgcatatttcg
ggattttttaatcctaattctacaactctatcaactccacttattccaacccaccaccac
ttcagaagctcaaaacgtaactttcacaaaacaacatttgcctcatgctcagtcatatta
tgtttcgctctgaaactctacatggatgtgaagaaatggagtagcctgtcaaagaatcaa
tcgatgccctgtaaggcacttcaatctcaattattctactcattgattatccaaactgca
attccaatagtccttttatgctttccaactggcttggcagtggtggttatattttttgga
aaggctcagaagttcaatggacaggcactgacgctgactgtatctttgtttcctgcaatt
gatccatttcccagtatgcttatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAGGCTTTCTTTTTGCACTAA 31 437 472 Antisense
TTGGCCTACTATGGCTTCAGTCTCT 326 707 574 Antisense
TTCAGTCTCTATAAGTCACTTCCCA 32 689 589 Antisense
TCACTTCCCAATTCCGAACCGAAGA 614 621 604 Antisense
AAACAACATTTGCCTCATGCTCAGT 264 129 740 Antisense
TTTCGCTCTGAAACTCTACATGGAT 367 669 774 Antisense
ATCGATGCCCTGTAAGGCACTTCAA 612 35 831 Antisense
GTCCTTTTATGCTTTCCAACTGGCT 75 477 901 Antisense
AATGGACAGGCACTGACGCTGACTG 289 163 967 Antisense
TGACGCTGACTGTATCTTTGTTTCC 707 569 980 Antisense
GATCCATTTCCCAGTATGCTTATTA 668 415 1012 Antisense
Sequence Source Affymetrix Proprietary Database