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[188775_s_at]

Description T11B7.4A /REP_DB=WormBase Gene ID /WP=CE03650 /TR=Q17878 /GB=CAA90991.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=LIM domains
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 34      6grp_total > 31      4grp_total > 58      6grp_highest_sub > 02_03      6grp_cgc > 62      6grp_high1_sub > 02_03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3357
1 2 3 4 range
A 1595.1
(-0.9)
P 		3751.4
(3)
P 		2606.2
(1)
P 		394.6
(-3)
P 		3357
B 1627.5
(-0.5)
P 		3288.4
(3)
P 		3014.9
(2.4)
P 		468.2
(-3)
P 		2820
C 1295.4
(-1.3)
P 		3432.8
(3)
P 		3445.3
(3)
P 		464.3
(-3)
P 		2981
avr 1506
(-0.9) 		3490.9
(3) 		3022.1
(2.1) 		442.4
(-3) 		3049

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2989
1 2 3 4 5 6 range
A 2448.2
(0.5)
P 		3649.8
(3)
P 		3109.6
(1.9)
P 		2817.3
(1.2)
P 		1748.3
(-1)
P 		800
(-3)
P 		2850
B 2029.8
(-0.2)
P 		3486.3
(3)
P 		3411.9
(2.8)
P 		2891.1
(1.7)
P 		1683.8
(-1)
P 		757
(-3)
P 		2729
C 2099.8
(0.1)
P 		3092.7
(2.2)
P 		3489.6
(3)
P 		2134.3
(0.1)
P 		2126
(0.1)
P 		661.1
(-3)
P 		2829
avr 2192.6
(0.3) 		3409.6
(3) 		3337
(2.8) 		2614.2
(1.2) 		1852.7
(-0.5) 		739.4
(-3) 		2670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1143
1 2 3 4 range
A 580.8
(1.1)
P 		814.3
(3)
P 		681.3
(1.9)
P 		57.8
(-3)
P 		757
B 519
(0.5)
P 		812.2
(3)
P 		698.6
(2)
P 		99.8
(-3)
P 		712
C 428.8
(-1.1)
P 		987
(1.9)
P 		1200.8
(3)
P 		78.3
(-3)
P 		1123
avr 509.5
(0.3) 		871.2
(3) 		860.2
(2.9) 		78.6
(-3) 		793

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1103
1 2 3 4 5 6 range
A 451.3
(-1.6)
P 		1298
(3)
P 		677.2
(-0.4)
P 		714.5
(-0.2)
P 		527.6
(-1.2)
P 		194.8
(-3)
P 		1103
B 706.3
(-0.1)
P 		1160.4
(3)
P 		828.5
(0.7)
P 		765.8
(0.3)
P 		684.1
(-0.3)
P 		282.3
(-3)
P 		878
C 778.3
(1.6)
P 		943.7
(3)
P 		888.2
(2.5)
P 		429.2
(-1.3)
P 		687.9
(0.9)
P 		221.3
(-3)
P 		722
avr 645.3
(-0.3) 		1134
(3) 		798
(0.8) 		636.5
(-0.3) 		633.2
(-0.3) 		232.8
(-3) 		901
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188775_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8561
Sequence Type Exemplar sequence
Representative Public ID T11B7.4A NCBI
Target Description T11B7.4A /REP_DB=WormBase Gene ID /WP=CE03650 /TR=Q17878 /GB=CAA90991.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=LIM domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028200(11), NM_069133(11), NM_001028199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028200 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 None
NM_069133 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 A 
NM_001028199 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-1) (eat-1) mRNA, complete cds. 11/11 None
SNAP00000008785 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8857587:8862012:1 11/11 None
GENEFINDER00000008802 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8859475:8862012:1 11/11 None
T11B7.4d ENSEMBL cdna:known chromosome:CEL140:IV:8852482:8862209:1 gene:T11B7.4 11/11 A 
T11B7.4b ENSEMBL cdna:known chromosome:CEL140:IV:8852496:8862012:1 gene:T11B7.4 11/11 A 
T11B7.4c ENSEMBL cdna:known chromosome:CEL140:IV:8854519:8862012:1 gene:T11B7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177701 4 3 NM_001028199 188775_s_at (11)
NM_001028200 188775_s_at (11)
NM_069133 188775_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8852501-8862018(+) 100.0 100.0
Public Domain and Genome References
Ensembl T11B7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90991 Hypothetical protein T11B7.4d [Caenorhabditis elegans] emb|CAA90978.1| Hypothetical protein T11B7.4d [Caenorhabditis elegans] ref|NP_001023371.1| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAE52902 Hypothetical protein T11B7.4c [Caenorhabditis elegans] emb|CAE52905.1| Hypothetical protein T11B7.4c [Caenorhabditis elegans] ref|NP_001023370.1| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAE52903 Hypothetical protein T11B7.4a [Caenorhabditis elegans] emb|CAE52906.1| Hypothetical protein T11B7.4a [Caenorhabditis elegans] ref|NP_501533.2| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
blast CAB54312 Hypothetical protein T11B7.4b [Caenorhabditis elegans] emb|CAB54190.2| Hypothetical protein T11B7.4b [Caenorhabditis elegans] ref|NP_501534.2| EATing: abnormal pharyngeal pumping family member (eat-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-6
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.5E-6
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.9E-11
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-16
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 8.1E-12
Sequence
Target Sequence 
>C. ELEGANS:188775_S_AT
aactgggcacttaactactactacaacaactcaacaaaatggaggacgagcaccattttg
tgagtcttgcaaacaacagattcgtggtgcattcgtccttgcaactggaaaatcatggtg
ccctgagcactttgtgtgtgccaattcctcatgccgccgacgtctccttgaatgcggatt
tgtcgaagaagatggtcaaaaattctgtgaatcatgtttcgagcaacatattgctccacg
gtgcaacaaatgctctaaaccaatcatctcggattgtttgaatgcgctacagaagaagtg
gcatccaacatgcttcacttgtgcacattgtcagaaaccgtttggaaacagtgcatttta
tttggagcaaggtcttccatactgtgagcaagattggaatgccctgttcacaacaaaatg
tgtcagttgtcgttatccaattgaagctggtgatcgatgggttgaggcattgggaaatgc
attccattctaattgcttcacttgtgcccgttgcaatcacaacctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGGGCACTTAACTACTACTACA 368 139 3705 Antisense
ACAGATTCGTGGTGCATTCGTCCTT 501 107 3780 Antisense
ATCATGGTGCCCTGAGCACTTTGTG 579 29 3816 Antisense
CACTTTGTGTGTGCCAATTCCTCAT 655 195 3832 Antisense
GACGTCTCCTTGAATGCGGATTTGT 637 377 3863 Antisense
GCAACATATTGCTCCACGGTGCAAC 116 319 3927 Antisense
CATCCAACATGCTTCACTTGTGCAC 312 211 4006 Antisense
GAGCAAGGTCTTCCATACTGTGAGC 88 391 4069 Antisense
GATTGGAATGCCCTGTTCACAACAA 662 433 4096 Antisense
ATTCTAATTGCTTCACTTGTGCCCG 213 11 4190 Antisense
TGCCCGTTGCAATCACAACCTGGAA 687 583 4209 Antisense
Sequence Source Affymetrix Proprietary Database