[Home] | [Total List]

[188774_at] G-protein coupled receptor, srh family

Description T01E8.7 /REP_DB=WormBase Gene ID /WP=CE25095 /TR=Q9NAN5 /GB=CAB76413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster 6grp_total > 47      4grp_total > 03      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 4.3
(-2.8)
A 		2.5
(-3)
A 		19
(-1.5)
A 		70.4
(3)
A 		68
B 29.8
(3)
P 		16
(-0.3)
A 		5.3
(-2.9)
A 		5
(-3)
A 		25
C 2.6
(-3)
A 		5.5
(-2)
A 		6.8
(-1.6)
A 		20.3
(3)
A 		18
avr 12.2
(-1.9) 		8
(-3) 		10.4
(-2.4) 		31.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.1
(-3)
A 		14.9
(-0.1)
A 		6.3
(-2)
A 		17.5
(0.5)
A 		3.1
(-2.8)
A 		28.4
(3)
A 		26
B 14.5
(1.5)
A 		10
(-0)
A 		3.9
(-2.1)
A 		19
(3)
A 		2.8
(-2.5)
A 		1.2
(-3)
A 		18
C 11.9
(3)
A 		6.7
(-0.1)
A 		3.9
(-1.8)
A 		2.9
(-2.3)
A 		6.8
(-0)
A 		1.8
(-3)
A 		10
avr 9.5
(0.6) 		10.5
(1.2) 		4.7
(-2.7) 		13.1
(3) 		4.2
(-3) 		10.5
(1.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-2.4)
A 		0.6
(-3)
A 		5
(-0.3)
A 		10.3
(3)
A 		10
B 9.5
(3)
P 		3.9
(-1)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		8
C 0.9
(-3)
A 		1.6
(-1.3)
A 		2.4
(0.6)
A 		3.4
(3)
A 		3
avr 4
(1.1) 		2
(-3) 		2.9
(-1.1) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.3
(1.5)
A 		1.4
(-2.1)
A 		4.4
(0.7)
A 		0.9
(-2.5)
A 		6.9
(3)
A 		7
B 5.1
(3)
A 		3.3
(0.7)
A 		0.9
(-2.4)
A 		5
(2.9)
A 		1.2
(-2)
A 		0.4
(-3)
A 		5
C 4.4
(3)
A 		2
(-0.8)
A 		1
(-2.4)
A 		0.6
(-3)
A 		2.2
(-0.5)
A 		0.6
(-3)
A 		4
avr 3.3
(2.5) 		3.5
(3) 		1.1
(-3) 		3.3
(2.5) 		1.4
(-2.3) 		2.6
(0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188774_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3954
Sequence Type Exemplar sequence
Representative Public ID T01E8.7 NCBI
Target Description T01E8.7 /REP_DB=WormBase Gene ID /WP=CE25095 /TR=Q9NAN5 /GB=CAB76413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=7tm receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063805 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-135) (srh-135) mRNA, complete cds. 11/11 None
SNAP00000042899 ENSEMBL cdna:SNAP chromosome:CEL140:II:10221807:10226785:-1 11/11 None
T01E8.7 ENSEMBL cdna:known chromosome:CEL140:II:10225953:10227040:-1 gene:T01E8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10225949-10227037(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-135
Ensembl T01E8.7
Entrez Gene 187952 Entrez gene
SwissProt Q9NAN5 EMBL-EBI
WormBase CE33163 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76413 Hypothetical protein T01E8.7 [Caenorhabditis elegans] ref|NP_496206.2| Serpentine Receptor, class H family member (srh-135) [Caenorhabditis elegans] 0.0
blast CAB76413 Hypothetical protein T01E8.7 [Caenorhabditis elegans] ref|NP_496206.2| Serpentine Receptor, class H family member (srh-135) [Caenorhabditis elegans] 1.0E-125
blast AAK18947 Serpentine receptor, class h protein 272 [Caenorhabditis elegans] ref|NP_503776.2| Serpentine Receptor, class H family member (srh-272) [Caenorhabditis elegans] 1.0E-60
blast NP_503718 Serpentine Receptor, class H family member (srh-271) [Caenorhabditis elegans] gb|AAF60378.2| Serpentine receptor, class h protein 271 [Caenorhabditis elegans] 4.0E-59
blast CAE64082 Hypothetical protein CBG08687 [Caenorhabditis briggsae] 6.0E-35
blast CAB60391 Hypothetical protein Y60A3A.3 [Caenorhabditis elegans] ref|NP_507867.1| Serpentine Receptor, class H family member (srh-183) [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.1E-99
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496206.2 7 19-41,54-76,96-118,139-158,195-217,238-260,270-292
T01E8.7 7 19-41,54-76,96-118,139-158,195-217,238-260,270-292
SNAP00000042899 5 10-32,52-74,110-132,153-175,185-207
Sequence
Target Sequence 
>C. ELEGANS:188774_AT
gtcagacgagctctgttctttattttcaactatttactggcgttcacttttgtcattcca
actattttacgtattccaaatcagtcggaagctatcaaaatagttaaggaacaatttcca
tgtgaagtcgatgaaaatcgattttttgtgttagctctggatgtccgtgtaactcactat
tcagttattatcactagttcattgattgaagggcagattatttattttgtcattcgactt
ttgatgaatttaagtggaaaagatgatagaaaatcagaaaggactagaaatttacaaaag
agactatttcgagcaatttgtattcaagttactattcctgttttactaatgtttattcca
tttctatttgtaattattcaagtttctctggagtatcataatcaagctcaaactaatatt
tctttatgcttgctatctcttcatggtttgatttcaactattgtgatgctcattgtgcat
aaaccatatcgtgatgctacactaaatatattggcagcttctaaactatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGACGAGCTCTGTTCTTTATTT 547 465 457 Antisense
TACTGGCGTTCACTTTTGTCATTCC 624 647 491 Antisense
GTCATTCCAACTATTTTACGTATTC 560 467 508 Antisense
TTTGTGTTAGCTCTGGATGTCCGTG 617 665 601 Antisense
GATGTCCGTGTAACTCACTATTCAG 420 409 616 Antisense
GGGCAGATTATTTATTTTGTCATTC 636 493 667 Antisense
GTTACTATTCCTGTTTTACTAATGT 13 447 784 Antisense
ATTATTCAAGTTTCTCTGGAGTATC 594 13 829 Antisense
AATATTTCTTTATGCTTGCTATCTC 75 175 871 Antisense
TGCTTGCTATCTCTTCATGGTTTGA 399 579 883 Antisense
TATTGGCAGCTTCTAAACTATTTCA 315 665 965 Antisense
Sequence Source Affymetrix Proprietary Database