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[188773_at]

Description F36H2.1 /REP_DB=WormBase Gene ID /WP=CE15993 /TR=O45878 /GB=CAB03079.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=E1-E2 ATPase
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 66      6grp_total > 04      4grp_total > 55      6grp_cgc > 41      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 876
1 2 3 4 range
A 1756
(3)
P 		923.3
(-3)
P 		1026.6
(-2.3)
P 		989.6
(-2.5)
P 		833
B 1706.3
(3)
P 		1013.5
(-2.5)
P 		1016.3
(-2.5)
P 		951.2
(-3)
P 		755
C 1713.1
(3)
P 		1067.4
(-1.7)
P 		1179.8
(-0.8)
P 		880.3
(-3)
P 		833
avr 1725.1
(3) 		1001.4
(-2.5) 		1074.2
(-2) 		940.4
(-3) 		785

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 644
1 2 3 4 5 6 range
A 1812.8
(3)
P 		1649.3
(1.4)
P 		1183.4
(-3)
P 		1396.6
(-1)
P 		1518.1
(0.2)
P 		1204.4
(-2.8)
P 		629
B 1641.7
(3)
P 		1569.5
(2.1)
P 		1186.2
(-2.8)
P 		1514.5
(1.4)
P 		1169.3
(-3)
P 		1309.4
(-1.2)
P 		472
C 1489.5
(3)
P 		1421
(1.4)
P 		1411.2
(1.2)
P 		1391
(0.8)
P 		1241.6
(-2.6)
P 		1225.6
(-3)
P 		264
avr 1648
(3) 		1546.6
(1.5) 		1260.3
(-2.8) 		1434
(-0.2) 		1309.7
(-2.1) 		1246.5
(-3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 639.4
(3)
P 		200.4
(-2.3)
P 		268.4
(-1.5)
P 		144.9
(-3)
P 		495
B 544.1
(3)
P 		250.3
(-2.2)
P 		235.5
(-2.4)
P 		202.7
(-3)
P 		341
C 567.1
(3)
P 		306.9
(-0.7)
P 		411.2
(0.8)
P 		148.4
(-3)
P 		419
avr 583.5
(3) 		252.5
(-1.7) 		305
(-1) 		165.3
(-3) 		418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 334.2
(-1.6)
P 		586.6
(3)
P 		257.7
(-3)
P 		354.2
(-1.2)
P 		458.1
(0.7)
P 		293.2
(-2.4)
P 		329
B 571.2
(3)
P 		522.4
(2)
P 		288
(-3)
P 		401.1
(-0.6)
P 		475.1
(1)
P 		488.3
(1.2)
P 		283
C 552.1
(3)
P 		433.6
(0.4)
P 		359.2
(-1.2)
P 		279.7
(-3)
P 		401.8
(-0.3)
P 		410.3
(-0.1)
P 		272
avr 485.8
(2.2) 		514.2
(3) 		301.6
(-3) 		345
(-1.8) 		445
(1) 		397.3
(-0.3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1875
Sequence Type Exemplar sequence
Representative Public ID F36H2.1 NCBI
Target Description F36H2.1 /REP_DB=WormBase Gene ID /WP=CE15993 /TR=O45878 /GB=CAB03079.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=E1-E2 ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026287(11), NM_001026286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026287 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) (tat-5) mRNA, complete cds. 11/11 None
NM_001026286 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) (tat-5) mRNA, complete cds. 11/11 None
F36H2.1b ENSEMBL cdna:known chromosome:CEL140:I:9242298:9254048:-1 gene:F36H2.1 11/11 A 
F36H2.1a ENSEMBL cdna:known chromosome:CEL140:I:9242802:9250243:-1 gene:F36H2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000831 8/11 Cross Hyb Matching Probes None
SNAP00000000825 8/11 Cross Hyb Matching Probes None
SNAP00000043677 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9242732-9250381(-) 100.0 100.0
Public Domain and Genome References
Ensembl F36H2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD92377 Hypothetical protein F36H2.1b [Caenorhabditis elegans] emb|CAD92394.1| Hypothetical protein F36H2.1b [Caenorhabditis elegans] ref|NP_001021458.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) [Caenorhabditis elegans] 0.0
blast CAB03079 Hypothetical protein F36H2.1a [Caenorhabditis elegans] emb|CAA16284.2| Hypothetical protein F36H2.1a [Caenorhabditis elegans] ref|NP_001021457.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-5) [Caenorhabditis elegans] 0.0
blast CAE70374 Hypothetical protein CBG16933 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A8A2_HUMAN (Q9NTI2) Potential phospholipid-transporting ATPase IB (EC 3.6.3.1) (ATPase class I type 8A member 2) (ML-1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 3.4E-4
Pfam IPR008250 EMBL-EBI E1-E2 ATPase-associated region 3.4E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021458.1 10 75-97,107-129,314-333,343-363,834-856,861-883,913-935,939-958,965-987,997-1019
NP_001021457.1 10 114-136,146-168,353-372,382-402,873-895,900-922,952-974,978-997,1004-1026,1036-1058
F36H2.1b 10 75-97,107-129,314-333,343-363,834-856,861-883,913-935,939-958,965-987,997-1019
F36H2.1a 10 114-136,146-168,353-372,382-402,873-895,900-922,952-974,978-997,1004-1026,1036-1058
Sequence
Target Sequence 
>C. ELEGANS:188773_AT
gtcacaatttgtcatgcatcgcggtctgataatttccacaatgcaagcaatcttctcatg
cgtcttctattttgcatctgtctccctgtatcagggtgttctcatggtggcctattcaac
gtgttacacaatgctcccggttttctcgttagtcgtcgatcgtgatgtcaccgccacaaa
tgctcttacctatcccgaattgtacaaagaactgggaaaaggacggagtttatcgtataa
aacattctgtatttgggtccttatttcgctttatcaaggtgctgttatcatgtacggtgc
ccttctggtcttcgatgccgactttatacacgtcgtctcgatctctttctctgctctaat
cgtcactgagcttattatggtagcaatgacggtgcacacgtggcattgggcgatgcttct
tgctcaggctctatcgctcggactctacatgatctctcttatcttattcgatcaatattt
cgaccgtcaattcgtcctctcatgggtttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACAATTTGTCATGCATCGCGGT 235 465 2577 Antisense
GCAAGCAATCTTCTCATGCGTCTTC 210 321 2619 Antisense
GTATCAGGGTGTTCTCATGGTGGCC 451 453 2664 Antisense
ATGGTGGCCTATTCAACGTGTTACA 456 49 2680 Antisense
TAGTCGTCGATCGTGATGTCACCGC 87 655 2726 Antisense
TTGGGTCCTTATTTCGCTTTATCAA 499 707 2829 Antisense
GGTGCTGTTATCATGTACGGTGCCC 310 501 2854 Antisense
TTTATACACGTCGTCTCGATCTCTT 465 673 2899 Antisense
GGACTCTACATGATCTCTCTTATCT 225 525 3016 Antisense
ATATTTCGACCGTCAATTCGTCCTC 629 13 3051 Antisense
AATTCGTCCTCTCATGGGTTTTTAT 488 175 3065 Antisense
Sequence Source Affymetrix Proprietary Database