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[188772_at] 7TM receptor

Description K05D4.2 /REP_DB=WormBase Gene ID /WP=CE16228 /TR=O17925 /GB=CAB07252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 36      4grp_total > 28      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 37.6
(0.8)
A 		46.3
(1.8)
A 		5.2
(-3)
A 		56.8
(3)
A 		52
B 22.2
(3)
A 		20.9
(2.6)
A 		3.2
(-3)
A 		19.4
(2.1)
A 		19
C 17
(-0.8)
A 		31.6
(1.5)
A 		2.5
(-3)
A 		41.3
(3)
A 		39
avr 25.6
(0.7) 		32.9
(1.9) 		3.6
(-3) 		39.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8.3
(1.9)
A 		2.9
(-2.8)
A 		6.4
(0.2)
A 		2.7
(-3)
A 		9.6
(3)
A 		3.5
(-2.3)
A 		7
B 22.6
(3)
A 		17.2
(0.8)
A 		7.6
(-3)
A 		8.3
(-2.7)
A 		12
(-1.3)
A 		22.7
(3)
A 		15
C 23.6
(0.7)
A 		37.4
(3)
A 		25.3
(1)
A 		20.8
(0.2)
A 		1.3
(-3)
A 		20.5
(0.2)
A 		36
avr 18.2
(2.5) 		19.2
(3) 		13.1
(-0.2) 		10.6
(-1.4) 		7.6
(-3) 		15.6
(1.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.7
(3)
A 		10
(1.2)
A 		1.4
(-3)
A 		8.3
(0.4)
A 		12
B 7.1
(3)
A 		5.2
(1.2)
A 		0.8
(-3)
A 		4.1
(0.1)
A 		6
C 5.6
(0.4)
A 		9.1
(3)
A 		0.9
(-3)
A 		7
(1.5)
A 		8
avr 8.8
(3) 		8.1
(2.5) 		1
(-3) 		6.5
(1.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.5
(-0.8)
A 		1
(-2.2)
A 		1.4
(-1.1)
A 		0.7
(-3)
A 		2.9
(3)
A 		0.9
(-2.5)
A 		2
B 7.9
(2.5)
A 		5.7
(0.5)
A 		1.8
(-3)
A 		2.2
(-2.6)
A 		4.9
(-0.2)
A 		8.5
(3)
A 		7
C 8.8
(1.6)
A 		11.4
(3)
A 		6.4
(0.3)
A 		4.2
(-0.9)
A 		0.4
(-3)
A 		6.9
(0.5)
A 		11
avr 6.1
(3) 		6
(2.8) 		3.2
(-1.7) 		2.4
(-3) 		2.7
(-2.5) 		5.4
(1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13056
Sequence Type Exemplar sequence
Representative Public ID K05D4.2 NCBI
Target Description K05D4.2 /REP_DB=WormBase Gene ID /WP=CE16228 /TR=O17925 /GB=CAB07252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074676 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-106) (str-106) mRNA, complete cds. 11/11 None
GENEFINDER00000023581 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16183233:16187306:1 11/11 None
K05D4.2 ENSEMBL cdna:known chromosome:CEL140:V:16183233:16184444:1 gene:K05D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16183232-16184444(+) 99.31 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-106
Ensembl K05D4.2
Entrez Gene 187023 Entrez gene
SwissProt O17925 EMBL-EBI
WormBase CE16228 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07252 Hypothetical protein K05D4.2 [Caenorhabditis elegans] ref|NP_507077.1| Seven TM Receptor family member (str-106) [Caenorhabditis elegans] 0.0
blast CAD89722 Hypothetical protein K05D4.8 [Caenorhabditis elegans] ref|NP_001024030.1| Serpentine Receptor, class Z family member (srz-13) [Caenorhabditis elegans] 1.0E-109
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 3.0E-99
blast CAB07350 Hypothetical protein F10A3.15 [Caenorhabditis elegans] ref|NP_507075.2| Seven TM Receptor family member (str-111) [Caenorhabditis elegans] 9.0E-99
blast CAB07349 Hypothetical protein F10A3.13 [Caenorhabditis elegans] ref|NP_507074.1| Seven TM Receptor family member (str-108) [Caenorhabditis elegans] 7.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.3E-18
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-25
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.5E-16
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 4.0E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507077.1 7 10-32,45-64,93-115,135-157,205-227,255-277,287-309
K05D4.2 7 10-32,45-64,93-115,135-157,205-227,255-277,287-309
GENEFINDER00000023581 15 10-32,45-64,93-115,135-157,205-227,255-277,287-309,348-370,375-392,405-427,442-464,486-508,548-570,586-608,618-635
Sequence
Target Sequence 
>C. ELEGANS:188772_AT
gaaactgttttctttggattctccttgtcttatcaaatttttctatctggttttattgct
gctatatttggaatggttcaaatgatataaaaaatgaaatagttatccccgaatttcgag
aagtctattgtcttgagccaaatgattatgcgtacaccggagctcaatatttctatggag
acctgtcaactggtacattgcacatgtatactccatcgtttgccgccgaagggacaactg
gctcaataatagtactatgtctgattctattaacatattttggatatcaaacctacaatc
acctctacaaactcgtacaacttactagccatacaactatggaacatcaaaatcagcttt
tccaaactttggtccttcaaactataataccagctatctttatgtacttcccagcttcat
gcatggttttatttccactttttcaactcaaaatcggagcaattgccaatttggttatga
cgtctgtgtctatatatccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGTTTTCTTTGGATTCTCCT 683 357 407 Antisense
GGATTCTCCTTGTCTTATCAAATTT 403 509 422 Antisense
TTCTATCTGGTTTTATTGCTGCTAT 482 691 447 Antisense
ATTATGCGTACACCGGAGCTCAATA 401 13 551 Antisense
GAGACCTGTCAACTGGTACATTGCA 208 395 584 Antisense
GCACATGTATACTCCATCGTTTGCC 437 315 606 Antisense
TGCCGCCGAAGGGACAACTGGCTCA 558 585 627 Antisense
ACAATCACCTCTACAAACTCGTACA 74 115 701 Antisense
AACTCGTACAACTTACTAGCCATAC 65 141 716 Antisense
ATACCAGCTATCTTTATGTACTTCC 241 23 793 Antisense
GACGTCTGTGTCTATATATCCATGT 686 377 885 Antisense
Sequence Source Affymetrix Proprietary Database