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[188771_at]

Description F21H7.7 /REP_DB=WormBase Gene ID /WP=CE19802 /TR=Q9XTV8 /GB=CAB07593.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 10      4grp_total > 02      6grp_cgc > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.9
(-3)
A 		7
(-2.7)
A 		3.6
(-3)
A 		80.3
(3)
A 		77
B 2.5
(-2.9)
A 		2.7
(-2.8)
A 		2
(-3)
A 		22.7
(3)
A 		21
C 3.3
(-2.7)
A 		2.9
(-3)
A 		2.9
(-3)
A 		11.6
(3)
A 		9
avr 3.2
(-2.9) 		4.2
(-2.8) 		2.8
(-3) 		38.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.8
(-3)
A 		6.4
(3)
A 		3.1
(-1.3)
A 		2.2
(-2.5)
A 		3.1
(-1.3)
A 		5.9
(2.3)
A 		5
B 1.5
(-3)
A 		1.5
(-3)
A 		21.3
(3)
A 		2.7
(-2.6)
A 		4.4
(-2.1)
A 		3.5
(-2.4)
A 		20
C 2.9
(-2.7)
A 		21.3
(3)
A 		2.3
(-2.8)
A 		5.9
(-1.7)
A 		1.8
(-3)
A 		4.9
(-2)
A 		20
avr 2.1
(-3) 		9.7
(3) 		8.9
(2.4) 		3.6
(-1.8) 		3.1
(-2.2) 		4.8
(-0.9) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.4
(-2.7)
A 		1.5
(-2.7)
A 		0.9
(-3)
A 		11.8
(3)
A 		11
B 0.8
(-2.6)
A 		0.7
(-2.7)
A 		0.5
(-3)
A 		4.8
(3)
A 		4
C 1.1
(-1.5)
A 		0.8
(-3)
A 		1
(-2)
A 		2
(3)
A 		1
avr 1.1
(-2.7) 		1
(-2.8) 		0.8
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.3
(-3)
A 		2.3
(3)
A 		0.7
(-1.8)
A 		0.6
(-2.1)
A 		0.9
(-1.2)
A 		1.4
(0.3)
A 		2
B 0.5
(-3)
A 		0.5
(-3)
A 		5.2
(3)
A 		0.7
(-2.7)
A 		1.8
(-1.3)
A 		1.3
(-2)
A 		5
C 1.1
(-2.5)
A 		6.5
(3)
A 		0.6
(-3)
A 		1.2
(-2.4)
A 		0.6
(-3)
A 		1.6
(-2)
A 		6
avr 0.6
(-3) 		3.1
(3) 		2.2
(0.8) 		0.8
(-2.5) 		1.1
(-1.8) 		1.4
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13625
Sequence Type Exemplar sequence
Representative Public ID F21H7.7 NCBI
Target Description F21H7.7 /REP_DB=WormBase Gene ID /WP=CE19802 /TR=Q9XTV8 /GB=CAB07593.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182412
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F21H7.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16243800:16245028:-1 gene:F21H7.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014734 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16243799-16246761(-) 100.0 100.0
Public Domain and Genome References
Ensembl F21H7.13
Sequence
Target Sequence 
>C. ELEGANS:188771_AT
gttttgtgttttgcttgctacttcattttgctctttaactcctttgtatctaattccttc
aatgtacggtgcttctaccattggacttcttagctggctggaaatgccttttataaatca
gatggtgcttacgggaattttcagagttgaaacgagacggagtcaaaagcggtttttaat
tggcataacgtttcaatgtgccattccatctctttttggagttaatccagttctaacagt
ttttatcgcatgtcgaacaggctatcattctcaggagctagtaaactttatggccgattg
tggtgggcttcacgggcttggaaaaagtttatccattttactagtgcacaagccgtatcg
gaaatttttcttgcgggtagtttgcaacgggaagcctaagaaatccacaacatcgattca
aatttctcctggacagtggtcggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGTGTTTTGCTTGCTACTTCA 600 447 1227 Antisense
GCTACTTCATTTTGCTCTTTAACTC 222 303 1243 Antisense
TAACTCCTTTGTATCTAATTCCTTC 589 637 1262 Antisense
ATTCCTTCAATGTACGGTGCTTCTA 492 7 1279 Antisense
GTGCTTCTACCATTGGACTTCTTAG 255 479 1295 Antisense
GATGGTGCTTACGGGAATTTTCAGA 322 407 1347 Antisense
ACGTTTCAATGTGCCATTCCATCTC 31 95 1414 Antisense
ACAGGCTATCATTCTCAGGAGCTAG 698 103 1483 Antisense
TGGTGGGCTTCACGGGCTTGGAAAA 582 553 1527 Antisense
ACTAGTGCACAAGCCGTATCGGAAA 91 103 1566 Antisense
AATTTCTCCTGGACAGTGGTCGGGA 670 173 1647 Antisense
Sequence Source Affymetrix Proprietary Database