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[188770_at]

Description F30B5.5 /REP_DB=WormBase Gene ID /WP=CE04466 /TR=Q19911 /GB=AAA83494.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 54      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 32.8
(0.5)
A 		52
(3)
A 		5.3
(-3)
A 		11.5
(-2.2)
A 		47
B 48.7
(3)
A 		48.9
(3)
A 		9.7
(-3)
A 		37.6
(1.3)
A 		39
C 24.4
(-1.1)
A 		3.6
(-3)
A 		4.2
(-2.9)
A 		69
(3)
A 		65
avr 35.3
(2.3) 		34.8
(2.2) 		6.4
(-3) 		39.4
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 2.2
(-3)
A 		4.3
(-2.8)
A 		53.4
(3)
A 		7.5
(-2.4)
A 		6.1
(-2.5)
A 		5
(-2.7)
A 		51
B 6.6
(-1.1)
A 		2.2
(-3)
A 		6.2
(-1.3)
A 		11.2
(0.9)
A 		4.9
(-1.8)
A 		16
(3)
A 		14
C 1
(-3)
A 		30.6
(2.8)
A 		31.7
(3)
A 		6.7
(-1.9)
A 		5
(-2.2)
A 		26.3
(1.9)
A 		31
avr 3.3
(-3) 		12.4
(-1) 		30.4
(3) 		8.5
(-1.8) 		5.3
(-2.6) 		15.8
(-0.2) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12
(3)
A 		11.3
(2.6)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		11
B 15.5
(3)
A 		12.1
(1.5)
A 		2.2
(-3)
A 		8
(-0.4)
A 		13
C 8.1
(1)
A 		1
(-3)
A 		1.5
(-2.7)
A 		11.6
(3)
A 		11
avr 11.9
(3) 		8.1
(0.8) 		1.7
(-3) 		7.1
(0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.5
(-2.4)
A 		11.6
(3)
A 		1.9
(-2.2)
A 		1.8
(-2.3)
A 		1.2
(-2.6)
A 		11
B 2.3
(-1.2)
A 		0.7
(-3)
A 		1.5
(-2.1)
A 		3
(-0.4)
A 		2
(-1.5)
A 		6
(3)
A 		5
C 0.4
(-3)
A 		9.3
(3)
A 		8.1
(2.2)
A 		1.4
(-2.3)
A 		1.6
(-2.2)
A 		8.8
(2.7)
A 		9
avr 1
(-3) 		3.8
(-0.2) 		7.1
(3) 		2.1
(-1.9) 		1.8
(-2.2) 		5.3
(1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10690
Sequence Type Exemplar sequence
Representative Public ID F30B5.5 NCBI
Target Description F30B5.5 /REP_DB=WormBase Gene ID /WP=CE04466 /TR=Q19911 /GB=AAA83494.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023153 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4219264:4221529:-1 11/11 None
GENEFINDER00000023160 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4219264:4221529:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4219269-4220760(-) 51.24 63.38
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29572 hypothetical protein F30B5.5 - Caenorhabditis elegans 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 1.0E-179
blast T19600 probable transposition protein C31A11.2 - Caenorhabditis elegans 1.0E-179
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 1.0E-158
blast AAF60591 Hypothetical protein Y45G12C.13 [Caenorhabditis elegans] 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.0E-5
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.0E-5
Sequence
Target Sequence 
>C. ELEGANS:188770_AT
atacttttgcgttatcatgctcagcatctttcacgagtcttgaaatggtttcagcccttg
agtctatagacaagctgatatttcatacccgcaagcgacgtgaacgtcttgatactacta
tgcttcgaaacagagatattgtctatgctccgggtgtcaaaattactctgaacgagcttc
tgttcatgaatgtttcgatgtttgtacagttcagttcggtttatctggaaaataaggaaa
caaatagttttttgaaacactggatttatggatcaaacagatcacttgagtacttcagta
tgcagtgtgacacatcgctgaacgagctgatcctttttgatgggttggaatatgaagaat
tatcatcgagaatggtcacaagataccgatacaagtttcatcctgaatcgagtttctatg
aaactgcatcaatttgcggtggattcagtattctaaggtatgatggagccagagccactg
ttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTTTGCGTTATCATGCTCAGC 81 25 1331 Antisense
ATGCTCAGCATCTTTCACGAGTCTT 297 43 1347 Antisense
AAATGGTTTCAGCCCTTGAGTCTAT 258 121 1373 Antisense
GACAAGCTGATATTTCATACCCGCA 469 365 1399 Antisense
ATACCCGCAAGCGACGTGAACGTCT 531 23 1415 Antisense
ACGTCTTGATACTACTATGCTTCGA 416 95 1434 Antisense
TATTGTCTATGCTCCGGGTGTCAAA 482 665 1467 Antisense
GCAGTGTGACACATCGCTGAACGAG 494 311 1632 Antisense
GCTGAACGAGCTGATCCTTTTTGAT 25 295 1647 Antisense
GATACCGATACAAGTTTCATCCTGA 105 425 1712 Antisense
GATGGAGCCAGAGCCACTGTTCAAT 183 407 1792 Antisense
Sequence Source Affymetrix Proprietary Database