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[188768_at]

Description Y55D9A.1 /REP_DB=WormBase Gene ID /WP=CE19234 /CHR=4 /FEA=Sanger Annotation /DEF=Sec7 domain (HINXTON) TR:Q9XWG7 protein_id:CAA21701.1
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 74      6grp_total > 69      4grp_total > 44      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 643.1
(-0.4)
P 		802.6
(3)
P 		519.3
(-3)
P 		608.6
(-1.1)
P 		283
B 656.5
(-0.2)
P 		764.4
(3)
P 		562.5
(-3)
P 		680.2
(0.5)
P 		202
C 751.8
(2.2)
P 		681
(1)
P 		794.7
(3)
P 		461.2
(-3)
P 		334
avr 683.8
(0.6) 		749.3
(3) 		625.5
(-1.5) 		583.3
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 424
1 2 3 4 5 6 range
A 702.4
(0.3)
P 		782.2
(1.5)
P 		497.5
(-3)
P 		642.6
(-0.7)
P 		804.6
(1.9)
P 		873.5
(3)
P 		376
B 568.2
(-3)
P 		634.7
(-1.5)
P 		739.7
(0.9)
P 		603.8
(-2.2)
P 		722.2
(0.5)
P 		833.2
(3)
P 		265
C 921.8
(3)
P 		704.3
(-3)
P 		808.5
(-0.1)
P 		773.7
(-1.1)
P 		711.2
(-2.8)
P 		741.2
(-2)
P 		218
avr 730.8
(-0.6) 		707.1
(-1.6) 		681.9
(-2.6) 		673.4
(-3) 		746
(0.1) 		816
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 234.2
(3)
P 		174.2
(0.5)
P 		135.7
(-1.1)
P 		89.1
(-3)
P 		145
B 209.4
(3)
P 		188.8
(1.4)
P 		130.3
(-3)
P 		145
(-1.9)
P 		79
C 248.9
(2.2)
P 		195.8
(0.6)
P 		277
(3)
P 		77.8
(-3)
P 		199
avr 230.8
(3) 		186.3
(0.9) 		181
(0.6) 		104
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 129.5
(-2.3)
P 		278.2
(3)
P 		108.3
(-3)
P 		163
(-1.1)
P 		242.8
(1.7)
P 		212.7
(0.7)
P 		170
B 197.7
(-1.5)
P 		211.3
(-1)
P 		179.6
(-2.2)
P 		159.9
(-3)
P 		293.4
(2.3)
P 		310.7
(3)
P 		151
C 341.7
(3)
P 		214.9
(-1.1)
P 		205.8
(-1.4)
P 		155.6
(-3)
P 		230.1
(-0.6)
P 		248.1
(-0)
P 		186
avr 223
(0.9) 		234.8
(1.6) 		164.6
(-2.7) 		159.5
(-3) 		255.4
(2.9) 		257.2
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188768_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10241
Sequence Type Exemplar sequence
Representative Public ID Y55D9A.1 NCBI
Target Description Y55D9A.1 /REP_DB=WormBase Gene ID /WP=CE19234 /CHR=4 /FEA=Sanger Annotation /DEF=Sec7 domain (HINXTON) TR:Q9XWG7 protein_id:CAA21701.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070015(11), NM_070016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070015 NCBI Caenorhabditis elegans Y55D9A.1b (Y55D9A.1) mRNA, complete cds. 11/11 None
NM_070016 NCBI Caenorhabditis elegans Y55D9A.1a (Y55D9A.1) mRNA, complete cds. 11/11 None
SNAP00000027793 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12606075:12614690:-1 11/11 None
GENEFINDER00000027794 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12606075:12615308:-1 11/11 None
Y55D9A.1b ENSEMBL cdna:known chromosome:CEL140:IV:12605667:12614690:-1 gene:Y55D9A.1 11/11 A 
Y55D9A.1a ENSEMBL cdna:known chromosome:CEL140:IV:12606075:12614694:-1 gene:Y55D9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12606080-12614696(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y55D9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70120 Hypothetical protein Y55D9A.1b [Caenorhabditis elegans] ref|NP_502416.1| Y55D9A.1b [Caenorhabditis elegans] 0.0
blast CAA21701 Hypothetical protein Y55D9A.1a [Caenorhabditis elegans] ref|NP_502417.1| Y55D9A.1a [Caenorhabditis elegans] 0.0
blast CAE67919 Hypothetical protein CBG13517 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000904 EMBL-EBI SEC7-like domain 4.4E-32
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-15
Pfam IPR000904 EMBL-EBI SEC7-like domain 4.4E-32
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-15
Pfam IPR000904 EMBL-EBI SEC7-like domain 4.4E-32
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-15
Sequence
Target Sequence 
>C. ELEGANS:188768_AT
atgcagtatcactacatcacgcactggctgaaccagcacctgattataagaagaaatcat
ttgtattcagagtacgaattgctcacggtggagagattctattccagacaagtaatcaga
aagagcttcaagaatggtgtgagaagattaatttcgttgccgccgcattctcatcgccaa
cacttccattgccagtcacttcgaaacctgaaactgcaccgatgccacgacttccacgga
ttccgtgtctcgctccgattaccaagcagctgagtactcatgaagcacgggttgccgaac
taaatgaaatgattgaaattgtatcacaatccgtatcacctaatcaaccacagcagctga
ttaccgatcgatgggtgcttttgagtttcgagaaacgacgctacagtacctatatcaacg
tactccgacggtcattggaagcaagaaaagcgtcttcagcaaccacaatgaacattatga
tgacaccaacaagacgtcagcaacagaatcaaaagccagttgtctcggaggatcgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGTATCACTACATCACGCACT 685 43 1886 Antisense
AGAAGATTAATTTCGTTGCCGCCGC 246 75 2027 Antisense
CCATTGCCAGTCACTTCGAAACCTG 460 269 2071 Antisense
CGAAACCTGAAACTGCACCGATGCC 611 251 2087 Antisense
CCACGACTTCCACGGATTCCGTGTC 74 275 2110 Antisense
TCGCTCCGATTACCAAGCAGCTGAG 66 601 2135 Antisense
GTATCACAATCCGTATCACCTAATC 542 453 2206 Antisense
CACAGCAGCTGATTACCGATCGATG 17 197 2234 Antisense
GAAACGACGCTACAGTACCTATATC 499 355 2277 Antisense
ATATCAACGTACTCCGACGGTCATT 216 7 2297 Antisense
GCCAGTTGTCTCGGAGGATCGTCTC 621 277 2400 Antisense
Sequence Source Affymetrix Proprietary Database