[Home] | [Total List]

[188767_at]

Description C45H4.5 /REP_DB=WormBase Gene ID /WP=CE08738 /TR=O44702 /GB=AAC25871.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 90      4grp_total > 28      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 65.1
(3)
A
32
(-3)
A
42.5
(-1.1)
A
50.2
(0.3)
A
33
B 80.7
(0.3)
A
88.8
(0.9)
A
36.4
(-3)
A
117.6
(3)
A
81
C 52.5
(-1)
A
74.6
(1)
A
30
(-3)
A
97.6
(3)
A
68
avr 66.1
(0.4)
65.1
(0.3)
36.3
(-3)
88.5
(3)
52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 30.9
(-0.8)
A
51.7
(3)
A
50.9
(2.9)
A
38.6
(0.6)
A
18.7
(-3)
A
26.5
(-1.6)
A
33
B 31.5
(-0.7)
A
45.1
(1.2)
A
25.9
(-1.5)
A
57.7
(3)
A
34
(-0.3)
A
14.9
(-3)
A
43
C 66.4
(-0.4)
A
55.6
(-0.8)
A
7.4
(-3)
A
141
(3)
A
73.5
(-0)
A
52.4
(-1)
A
134
avr 42.9
(-1.3)
50.8
(-0.3)
28.1
(-3)
79.1
(3)
42.1
(-1.4)
31.3
(-2.6)
51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.7
(3)
A
6.9
(-3)
A
11.1
(-1.5)
A
7.4
(-2.8)
A
17
B 25.7
(3)
A
21.9
(1.7)
A
8.4
(-3)
A
25.1
(2.8)
A
17
C 17.4
(0.8)
A
21.4
(3)
A
10.4
(-3)
A
16.5
(0.3)
A
11
avr 22.3
(3)
16.7
(0.3)
10
(-3)
16.3
(0.1)
12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.7
(-3)
A
18.4
(3)
A
11.1
(-0.4)
A
9.8
(-1)
A
5.6
(-3)
A
6.4
(-2.6)
A
13
B 11
(0.3)
A
15
(2.8)
A
6.3
(-2.6)
A
15.3
(3)
A
13.8
(2.1)
A
5.6
(-3)
A
10
C 24.6
(2.1)
A
17
(0.4)
A
1.9
(-3)
A
28.4
(3)
A
23.8
(2)
A
17.6
(0.6)
A
27
avr 13.8
(0.9)
16.8
(2.5)
6.4
(-3)
17.8
(3)
14.4
(1.2)
9.9
(-1.2)
11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15809
Sequence Type Exemplar sequence
Representative Public ID C45H4.5 NCBI
Target Description C45H4.5 /REP_DB=WormBase Gene ID /WP=CE08738 /TR=O44702 /GB=AAC25871.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
GENEFINDER00000009357 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2172653:2174240:1 11/11 None
C45H4.5 ENSEMBL cdna:pseudogene chromosome:CEL140:V:2171246:2174240:1 gene:C45H4.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2171355-2174341(+) 37.4 100.0
Public Domain and Genome References
Ensembl C45H4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
blast AAF60591 Hypothetical protein Y45G12C.13 [Caenorhabditis elegans] 0.0
blast T19600 probable transposition protein C31A11.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 6.1E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009357 3 339-361,378-400,410-432
Sequence
Target Sequence
>C. ELEGANS:188767_AT
atggcaacaagtgcccttgtcagtaattattgagatcatagttcaaccagtcacatttgt
tcttataatttcactaaatattgtaatgcttataaaattttacctagtgaagcaaatccg
aaaccctcccagcccggcaaaaagcggcaagaacgagaccgttctcaccactactatgat
attattaattctacccatcgttttcaatattatcgtcgcattctacgaatgtttcgacaa
ttttgattactacatataccttattcgcccattttttatcgatgctcaatctcatataat
aacttgttatttctattttactcatcccatatt


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATGGCAACAAGTGCCCTTGTCAGTA 322 53 1302 Antisense
AGTTCAACCAGTCACATTTGTTCTT 221 63 1341 Antisense
TAGTGAAGCAAATCCGAAACCCTCC 227 649 1406 Antisense
CTCCCAGCCCGGCAAAAAGCGGCAA 260 233 1427 Antisense
ACCGTTCTCACCACTACTATGATAT 3 89 1459 Antisense
ATTAATTCTACCCATCGTTTTCAAT 613 11 1485 Antisense
GTTTTCAATATTATCGTCGCATTCT 174 449 1501 Antisense
GTCGCATTCTACGAATGTTTCGACA 344 475 1516 Antisense
TACTACATATACCTTATTCGCCCAT 512 645 1549 Antisense
TTCGCCCATTTTTTATCGATGCTCA 281 697 1565 Antisense
ATTTCTATTTTACTCATCCCATATT 223 17 1610 Antisense
Sequence Source Affymetrix Proprietary Database