[Home] | [Total List]

[188766_at]

Description F44A6.1 /REP_DB=WormBase Gene ID /WP=CE03322 /TR=Q20384 /GB=CAA90721.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nucleobindin
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 26      4grp_high_8_8 > 60      6grp_highest_nonorm > 31      6grp_total > 09      4grp_total > 60      6grp_cgc > 50      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1199
1 2 3 4 range
A 865.3
(0.1)
P 		1078.5
(1.4)
P 		1338.2
(3)
P 		349.2
(-3)
P 		989
B 1036.6
(0.7)
P 		949.4
(0.2)
P 		1462.9
(3)
P 		371.6
(-3)
P 		1091
C 952.8
(0.6)
P 		900.7
(0.3)
P 		1412.2
(3)
P 		263.6
(-3)
P 		1149
avr 951.6
(0.5) 		976.2
(0.6) 		1404.4
(3) 		328.1
(-3) 		1076

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 870
1 2 3 4 5 6 range
A 1334.1
(3)
P 		1052.8
(1.1)
P 		674.4
(-1.5)
P 		1123.3
(1.5)
P 		828.6
(-0.5)
P 		463.9
(-3)
P 		870
B 1045.9
(3)
P 		723.1
(-0.5)
P 		961.9
(2.1)
P 		1042.9
(3)
P 		700
(-0.8)
P 		499.7
(-3)
P 		546
C 1002.1
(2.5)
P 		734.4
(-0.6)
P 		1049
(3)
P 		896.3
(1.2)
P 		783
(-0)
P 		525.5
(-3)
P 		524
avr 1127.4
(3) 		836.8
(0.2) 		895.1
(0.8) 		1020.8
(2) 		770.5
(-0.4) 		496.4
(-3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 315
(2.3)
P 		234.1
(0.7)
P 		349.8
(3)
P 		51.1
(-3)
P 		299
B 330.6
(2.8)
P 		234.5
(0.6)
P 		339
(3)
P 		79.2
(-3)
P 		260
C 315.4
(0.6)
P 		259
(-0.1)
P 		492.2
(3)
P 		44.4
(-3)
P 		448
avr 320.3
(1.7) 		242.5
(0.3) 		393.7
(3) 		58.2
(-3) 		336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 245.9
(0.1)
P 		374.4
(3)
P 		146.9
(-2.2)
P 		284.9
(0.9)
P 		250.1
(0.1)
P 		112.9
(-3)
P 		262
B 363.9
(3)
P 		240.7
(-1.2)
P 		233.6
(-1.4)
P 		276.2
(0)
P 		284.4
(0.3)
P 		186.3
(-3)
P 		178
C 371.4
(3)
P 		224.1
(-1.5)
P 		267
(-0.2)
P 		180.3
(-2.9)
P 		253.4
(-0.6)
P 		175.9
(-3)
P 		196
avr 327.1
(3) 		279.7
(1.3) 		215.8
(-1) 		247.1
(0.2) 		262.6
(0.7) 		158.4
(-3) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16470
Sequence Type Exemplar sequence
Representative Public ID F44A6.1 NCBI
Target Description F44A6.1 /REP_DB=WormBase Gene ID /WP=CE03322 /TR=Q20384 /GB=CAA90721.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=nucleobindin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171970(11), NM_171763(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171970 NCBI Caenorhabditis elegans F44A6.1a (nucleobindin) mRNA, complete cds. 11/11 None
NM_171763 NCBI Caenorhabditis elegans F44A6.1b (nucleobindin) mRNA, complete cds. 11/11 None
SNAP00000009271 ENSEMBL cdna:SNAP chromosome:CEL140:X:10197637:10200077:1 11/11 None
GENEFINDER00000009277 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10197637:10200077:1 11/11 None
F44A6.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:10197632:10200277:1 gene:F44A6.1 11/11 None
F44A6.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:10197634:10200284:1 gene:F44A6.1 11/11 None
F44A6.1b ENSEMBL cdna:known chromosome:CEL140:X:10197637:10200335:1 gene:F44A6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10197636-10200077(+) 96.84 100.0
Public Domain and Genome References
Ensembl F44A6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44134 Hypothetical protein F44A6.1b [Caenorhabditis elegans] ref|NP_741885.1| F44A6.1b [Caenorhabditis elegans] 0.0
blast CAA90721 Hypothetical protein F44A6.1a [Caenorhabditis elegans] ref|NP_741886.1| F44A6.1a [Caenorhabditis elegans] 0.0
blast AAO27836 nucleobindin [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188766_AT
tttgcacttcacgacctgaacggagatggtttctggaatgattttgagctggaatctctt
ttccaactagagcttgaaaaaatgtataacgaaaccaacccagacgacgacatgaaagaa
agagctgaggagatgtaccgtatgagagagcacgttatgaagcaaattgatgttaatcag
gatcgcatgatctctatgcaagagttcttgaatgattctgacaatcagaattcaaatcca
ccaaagcaagaagaatgggaagatctgggacagaagaaagtgtatacggatgaagaactc
cagcagtttgaaagagaatatgcacaaaaacaagaacaacaacatccgcaagaagctgtc
caacaaccaccacaggctcagcaacaagttcaccctgctcaacagccaattcaaccggtg
aatgcaaatccaccacctgttcaaaatgcgcaaccgcctgtgcaacagcaacaacaacct
ccacagcaaccaccgcaacaaccacctcaacaaaatttgccccctgtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCACTTCACGACCTGAACGGAG 687 667 796 Antisense
GGAATCTCTTTTCCAACTAGAGCTT 355 531 846 Antisense
AAACCAACCCAGACGACGACATGAA 247 125 887 Antisense
ATCAGGATCGCATGATCTCTATGCA 425 29 971 Antisense
CAGAATTCAAATCCACCAAAGCAAG 397 203 1021 Antisense
AACATCCGCAAGAAGCTGTCCAACA 179 137 1136 Antisense
CAGGCTCAGCAACAAGTTCACCCTG 399 209 1168 Antisense
CAAATCCACCACCTGTTCAAAATGC 82 193 1220 Antisense
GTTCAAAATGCGCAACCGCCTGTGC 675 441 1234 Antisense
CAACCGCCTGTGCAACAGCAACAAC 438 187 1246 Antisense
TCAACAAAATTTGCCCCCTGTGCAC 632 629 1302 Antisense
Sequence Source Affymetrix Proprietary Database