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[188762_s_at] CD36 family

Description Y76A2B.6 /REP_DB=WormBase Gene ID /WP=CE23054 /TR=Q9XWC8 /GB=CAA21747.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CD36 family
Cluster 6grp_high1_10_10 > 56      4grp_high_8_8 > 13      6grp_total > 47      4grp_total > 02      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 93.9
(-2.3)
A 		72
(-3)
A 		92.9
(-2.3)
A 		255.7
(3)
P 		184
B 94
(-2.5)
P 		108.3
(-2.1)
M 		75.8
(-3)
P 		304.6
(3)
P 		229
C 111.2
(-2.9)
P 		120.9
(-2.5)
P 		107.2
(-3)
P 		269.4
(3)
P 		162
avr 99.7
(-2.7) 		100.4
(-2.7) 		92
(-3) 		276.6
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 157.3
(2.2)
P 		115.8
(-1.1)
P 		128.8
(-0.1)
P 		131.5
(0.2)
P 		92.2
(-3)
P 		166.9
(3)
P 		75
B 143.4
(1.5)
P 		122.7
(0.1)
P 		77.1
(-3)
P 		96.6
(-1.7)
P 		77.6
(-3)
P 		165.1
(3)
P 		88
C 118.6
(0.2)
P 		139.9
(1.1)
P 		87.8
(-1.1)
P 		40.1
(-3)
A 		107.4
(-0.3)
P 		187.4
(3)
P 		147
avr 139.8
(0.6) 		126.1
(-0.4) 		97.9
(-2.4) 		89.4
(-3) 		92.4
(-2.8) 		173.1
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 34.2
(2.1)
A 		15.6
(-3)
A 		24.3
(-0.6)
A 		37.4
(3)
P 		22
B 30
(-1.4)
P 		26.7
(-1.8)
M 		17.6
(-3)
P 		64.9
(3)
P 		47
C 36.8
(-1.9)
P 		34.8
(-3)
P 		37.4
(-1.5)
P 		45.4
(3)
P 		11
avr 33.7
(-1) 		25.7
(-3) 		26.4
(-2.8) 		49.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 29
(-2.5)
P 		41.2
(3)
P 		28
(-2.9)
P 		33.3
(-0.5)
P 		27.8
(-3)
P 		40.6
(2.7)
P 		13
B 49.9
(1.4)
P 		40.8
(0.1)
P 		18.7
(-3)
P 		25.6
(-2)
P 		31.5
(-1.2)
P 		61.6
(3)
P 		43
C 44
(0.9)
P 		42.7
(0.8)
P 		22.4
(-1.4)
P 		8.1
(-3)
A 		34.7
(-0.1)
P 		62.7
(3)
P 		55
avr 41
(0.4) 		41.6
(0.5) 		23
(-2.9) 		22.3
(-3) 		31.3
(-1.3) 		55
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188762_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6783
Sequence Type Exemplar sequence
Representative Public ID Y76A2B.6 NCBI
Target Description Y76A2B.6 /REP_DB=WormBase Gene ID /WP=CE23054 /TR=Q9XWC8 /GB=CAA21747.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=CD36 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067401(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067401 NCBI Caenorhabditis elegans Y76A2B.6 (Y76A2B.6) mRNA, complete cds. 11/11 None
Y76A2B.6 ENSEMBL cdna:known chromosome:CEL140:III:13550215:13554850:-1 gene:Y76A2B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13550333-13553632(-) 100.0 100.0
Public Domain and Genome References
Gene Title CD36 family
Ensembl Y76A2B.6
Entrez Gene 176787 Entrez gene
SwissProt Q9XWC8 EMBL-EBI
WormBase CE31845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602399_AT similar to Lysosome membrane protein II (LIMP II) (Scavenger receptor class B, member 2) (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (CD36 antigen-like 2) cfa
CANINE:1597923_S_AT similar to Lysosome membrane protein II (LIMP II) (Scavenger receptor class B, member 2) (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (CD36 antigen-like 2) cfa
CANINE_2:CFA.1988.1.S1_AT similar to Lysosome membrane protein II (LIMP II) (Scavenger receptor class B, member 2) (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (CD36 antigen-like 2) cfa
CANINE_2:CFAAFFX.13613.1.S1_S_AT similar to Lysosome membrane protein II (LIMP II) (Scavenger receptor class B, member 2) (85 kDa lysosomal membrane sialoglycoprotein) (LGP85) (CD36 antigen-like 2) cfa
CHICKEN:GGA.5283.1.S1_AT scavenger receptor class B, member 2 gga
HG-U133_PLUS_2:201646_AT scavenger receptor class B, member 2 hs
HG-U133A_2:201646_AT scavenger receptor class B, member 2 hs
HG-U133A:201646_AT scavenger receptor class B, member 2 hs
HG-U133_PLUS_2:215754_AT scavenger receptor class B, member 2 hs
HG-U133A_2:215754_AT scavenger receptor class B, member 2 hs
HG-U133A:215754_AT scavenger receptor class B, member 2 hs
HG-FOCUS:201647_S_AT scavenger receptor class B, member 2 hs
HG-U133A_2:201647_S_AT scavenger receptor class B, member 2 hs
HG-U133A:201647_S_AT scavenger receptor class B, member 2 hs
HG-U133_PLUS_2:201647_S_AT scavenger receptor class B, member 2 hs
HU35KSUBA:W52581_AT scavenger receptor class B, member 2 hs
HU35KSUBC:RC_N23222_AT scavenger receptor class B, member 2 hs
HUGENEFL:D12676_AT scavenger receptor class B, member 2 hs
U133_X3P:G5031630_3P_A_AT scavenger receptor class B, member 2 hs
U133_X3P:HS.85963.1.A1_3P_AT scavenger receptor class B, member 2 hs
U133_X3P:HS.323567.0.A2_3P_AT scavenger receptor class B, member 2 hs
U133_X3P:HS.301615.0.S1_3P_AT scavenger receptor class B, member 2 hs
HG-U133_PLUS_2:224983_AT scavenger receptor class B, member 2 hs
HG-U133B:224983_AT scavenger receptor class B, member 2 hs
HG-U95AV2:33823_AT scavenger receptor class B, member 2 hs
HG-U95B:46317_AT scavenger receptor class B, member 2 hs
HG-U95E:87645_AT Scavenger receptor class B, member 2 hs
HU35KSUBD:RC_AA176688_AT Scavenger receptor class B, member 2 hs
MOE430A:1460235_AT scavenger receptor class B, member 2 mm
MOUSE430A_2:1460235_AT scavenger receptor class B, member 2 mm
MOUSE430_2:1460235_AT scavenger receptor class B, member 2 mm
MU11KSUBA:AB008553_G_AT scavenger receptor class B, member 2 mm
MU11KSUBA:AB008553_AT scavenger receptor class B, member 2 mm
MG-U74AV2:101389_AT scavenger receptor class B, member 2 mm
MG-U74BV2:112784_AT scavenger receptor class B, member 2 mm
MOE430A:1454704_AT scavenger receptor class B, member 2 mm
MOUSE430A_2:1454704_AT scavenger receptor class B, member 2 mm
MOUSE430_2:1454704_AT scavenger receptor class B, member 2 mm
MU19KSUBA:TC18007_AT Scavenger receptor class B, member 2, mRNA (cDNA clone MGC:11451 IMAGE:3962669) mm
RG-U34A:D10587_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RG-U34A:D10587_G_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAE230A:1368379_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAT230_2:1368379_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAE230A:1371506_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAT230_2:1371506_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAE230B:1395327_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RAT230_2:1395327_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
RG-U34A:RC_AA891207_AT CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD45598 Hypothetical protein Y76A2B.6 [Caenorhabditis elegans] emb|CAA21747.2| Hypothetical protein Y76A2B.6 [Caenorhabditis elegans] ref|NP_499802.2| Y76A2B.6 [Caenorhabditis elegans] 0.0
blast CAE69263 Hypothetical protein CBG15314 [Caenorhabditis briggsae] 0.0
blast CAE66423 Hypothetical protein CBG11692 [Caenorhabditis briggsae] 8.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002159 EMBL-EBI CD36 antigen 3.2E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499802.2 3 35-57,497-519,592-614
Y76A2B.6 3 35-57,497-519,592-614
Sequence
Target Sequence 
>C. ELEGANS:188762_S_AT
agttggagcagttctctacgctcgtcgtgtttcccaagtaaatattgaaatgtggaaggg
aaagaatctcacattcccagtaaacttgaaaaagatgaaatccgcgttgattcctgtgct
gatacttcacgagacatctgaaatcgacgatgattcactggaacagatacgatcacaact
ctacgaaactgagtcaattgcctatacatcgtgtgatgttatgatgatcattggagcaat
tatgctgcttctcggattcctatttctctcgttttcgctcggactctgtgacccgattct
cggacggcggtcaaaacgggcaaatggattgtcaccggaacctcttcctccgtatgttcc
gaagggagaacccaacggataccaccataatcatgcctacataactggtttatttggaaa
aaacttttcgaattttgaaaaaaatccaattttcaaaccttcatcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGGAGCAGTTCTCTACGCTCGT 542 65 1050 Antisense
CTCGTCGTGTTTCCCAAGTAAATAT 165 233 1070 Antisense
TGAAATCCGCGTTGATTCCTGTGCT 243 573 1145 Antisense
TTCCTGTGCTGATACTTCACGAGAC 648 699 1160 Antisense
GATACGATCACAACTCTACGAAACT 35 423 1215 Antisense
TGGAGCAATTATGCTGCTTCTCGGA 559 549 1281 Antisense
GATTCTCGGACGGCGGTCAAAACGG 186 423 1344 Antisense
AAATGGATTGTCACCGGAACCTCTT 440 119 1371 Antisense
TCTTCCTCCGTATGTTCCGAAGGGA 706 615 1392 Antisense
GGATACCACCATAATCATGCCTACA 347 511 1426 Antisense
ATCCAATTTTCAAACCTTCATCGGT 312 41 1493 Antisense
Sequence Source Affymetrix Proprietary Database