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[188759_at] 7TM receptor

Description C06C6.3 /REP_DB=WormBase Gene ID /WP=CE15597 /TR=O62029 /GB=CAB07553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 35      4grp_total > 26      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 63
(-3)
A 		81.1
(-1.1)
A 		121.3
(3)
A 		120.7
(2.9)
A 		58
B 83.5
(-0.6)
A 		92.6
(1.1)
A 		70.1
(-3)
A 		103.3
(3)
A 		33
C 100.3
(0.3)
A 		133.2
(3)
A 		59.9
(-3)
A 		114.8
(1.5)
A 		73
avr 82.3
(-3) 		102.3
(0.9) 		83.8
(-2.7) 		112.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 110.2
(3)
A 		96.4
(2.1)
A 		60.9
(-0.3)
A 		20.6
(-3)
A 		63.1
(-0.2)
A 		52
(-0.9)
A 		90
B 74.8
(-1.6)
A 		101.6
(3)
A 		66.8
(-3)
A 		79.9
(-0.7)
A 		67.9
(-2.8)
A 		76.8
(-1.3)
A 		35
C 65.4
(0.1)
A 		82.4
(3)
A 		82.1
(2.9)
A 		47.2
(-3)
A 		52.1
(-2.2)
A 		69.5
(0.8)
A 		35
avr 83.5
(1.6) 		93.5
(3) 		69.9
(-0.2) 		49.2
(-3) 		61
(-1.4) 		66.1
(-0.7) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.9
(-0.7)
A 		17.6
(-3)
A 		31.7
(3)
A 		17.7
(-3)
A 		14
B 26.6
(3)
A 		22.9
(0.9)
A 		16.2
(-3)
A 		22
(0.3)
A 		10
C 33.2
(1.4)
A 		38.3
(3)
A 		20.9
(-2.5)
A 		19.4
(-3)
A 		19
avr 27.6
(3) 		26.3
(2) 		22.9
(-0.6) 		19.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 20.3
(0.1)
A 		34.3
(3)
A 		13.3
(-1.3)
A 		5.2
(-3)
A 		19
(-0.2)
A 		12.7
(-1.5)
A 		29
B 26
(0.3)
A 		33.8
(3)
A 		16.2
(-3)
A 		21.2
(-1.3)
A 		27.6
(0.9)
A 		28.7
(1.3)
A 		18
C 24.3
(2.7)
A 		25.2
(3)
A 		20.9
(1.4)
A 		9.5
(-3)
A 		16.9
(-0.2)
A 		23.3
(2.3)
A 		16
avr 23.5
(0.6) 		31.1
(3) 		16.8
(-1.5) 		12
(-3) 		21.2
(-0.1) 		21.6
(0) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13606
Sequence Type Exemplar sequence
Representative Public ID C06C6.3 NCBI
Target Description C06C6.3 /REP_DB=WormBase Gene ID /WP=CE15597 /TR=O62029 /GB=CAB07553.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074616 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-231) (str-231) mRNA, complete cds. 11/11 None
SNAP00000040513 ENSEMBL cdna:SNAP chromosome:CEL140:V:16008887:16010188:-1 11/11 None
GENEFINDER00000040516 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16008887:16010188:-1 11/11 None
C06C6.3 ENSEMBL cdna:known chromosome:CEL140:V:16008887:16010188:-1 gene:C06C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16008886-16010188(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol str-231
Ensembl C06C6.3
Entrez Gene 182308 Entrez gene
SwissProt O62029 EMBL-EBI
WormBase CE35384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07553 Hypothetical protein C06C6.3 [Caenorhabditis elegans] ref|NP_507017.2| Seven TM Receptor family member (str-231) [Caenorhabditis elegans] 0.0
blast CAE74820 Hypothetical protein CBG22656 [Caenorhabditis briggsae] 1.0E-120
blast CAE70473 Hypothetical protein CBG17066 [Caenorhabditis briggsae] 9.0E-90
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507017.2 7 15-34,47-69,89-111,132-154,209-231,252-274,289-311
C06C6.3 7 15-34,47-69,89-111,132-154,209-231,252-274,289-311
SNAP00000040513 7 15-34,47-69,89-111,132-154,209-231,252-274,289-311
GENEFINDER00000040516 7 15-34,47-69,89-111,132-154,209-231,252-274,289-311
Sequence
Target Sequence 
>C. ELEGANS:188759_AT
tctccgctgatattcgctacgatatggtcagcagctattgcagtgttcatgccattgaat
aactttgcaaaaatcgttttgataagagaatcagtgtttccgagtgatgtggagcttgac
aatattggattttgcggggcgctgttttatccaaaatctgaggatggtacagaggtgatc
aactgggattcaatgagaggagtcgccgtgactacgactatactgataagctctgaaata
accatgttcttctttgcattgaaatgcttcctggccaccaagtcactaatgaatcaatcc
ggccactcaaaaaacttccgtcatcttcaatggcaattgttttacgccctcgctctccag
acccttatcccgatcacactgattcaaggcccattctctacaatttacatgaccacattg
cttctagactgttcaactccattgttcggaaatttcttagcattttccatcacattgtac
ttggcgatagacgcacttccaactattttcatcattaagcactatagacaagccatattt
gggtatttcaagcagttcaaaatagtgcgagttcaaccgaaaccgtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCGCTGATATTCGCTACGATAT 683 609 430 Antisense
GATTTTGCGGGGCGCTGTTTTATCC 11 427 557 Antisense
TTCCTGGCCACCAAGTCACTAATGA 20 701 697 Antisense
AATCAATCCGGCCACTCAAAAAACT 342 167 721 Antisense
AAACTTCCGTCATCTTCAATGGCAA 165 129 741 Antisense
AATGGCAATTGTTTTACGCCCTCGC 152 163 758 Antisense
CTGATTCAAGGCCCATTCTCTACAA 359 235 808 Antisense
ACATGACCACATTGCTTCTAGACTG 508 105 836 Antisense
TAGACTGTTCAACTCCATTGTTCGG 507 651 854 Antisense
ATTTCTTAGCATTTTCCATCACATT 241 17 881 Antisense
GTGCGAGTTCAACCGAAACCGTATC 113 471 994 Antisense
Sequence Source Affymetrix Proprietary Database