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[188758_at] keratin like

Description F07H5.8 /REP_DB=WormBase Gene ID /WP=CE03157 /TR=Q19182 /GB=CAA92662.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=keratin like
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 552
1 2 3 4 range
A 12
(-3)
A 		482.6
(2.3)
P 		546.8
(3)
P 		49.5
(-2.6)
A 		535
B 23.6
(-2.9)
A 		538.1
(2.7)
P 		564.3
(3)
P 		17.7
(-3)
A 		547
C 90.5
(-2.9)
A 		504.8
(3)
P 		494.9
(2.9)
P 		85.6
(-3)
M 		419
avr 42
(-3) 		508.5
(2.7) 		535.3
(3) 		50.9
(-2.9) 		493

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 143.4
(-3)
P 		385
(3)
P 		185.1
(-2)
P 		171.7
(-2.3)
P 		259.5
(-0.1)
P 		302
(0.9)
P 		242
B 132.6
(-3)
P 		265.2
(3)
P 		168.2
(-1.4)
P 		190.9
(-0.4)
P 		250.3
(2.3)
P 		237.2
(1.7)
P 		133
C 99.9
(-3)
M 		298.1
(2)
P 		245.8
(0.7)
P 		214.6
(-0.1)
P 		338.1
(3)
P 		274.1
(1.4)
P 		238
avr 125.3
(-3) 		316.1
(3) 		199.7
(-0.7) 		192.4
(-0.9) 		282.6
(1.9) 		271.1
(1.6) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 4.4
(-3)
A 		104.8
(1.3)
P 		142.9
(3)
P 		7.2
(-2.9)
A 		139
B 7.5
(-2.8)
A 		132.9
(3)
P 		130.8
(2.9)
P 		3.8
(-3)
A 		129
C 30
(-2.4)
A 		145.1
(2)
P 		172.5
(3)
P 		14.4
(-3)
M 		158
avr 14
(-2.8) 		127.6
(2.1) 		148.7
(3) 		8.5
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 26.4
(-3)
P 		136.9
(3)
P 		40.3
(-2.2)
P 		43.5
(-2.1)
P 		78.3
(-0.2)
P 		73.5
(-0.4)
P 		111
B 46.1
(-2.5)
P 		88.3
(1.7)
P 		40.8
(-3)
P 		50.6
(-2)
P 		101.7
(3)
P 		88.4
(1.7)
P 		61
C 37
(-3)
M 		91
(1.5)
P 		62.6
(-0.9)
P 		43.2
(-2.5)
P 		109.4
(3)
P 		91.8
(1.5)
P 		72
avr 36.5
(-3) 		105.4
(3) 		47.9
(-2) 		45.8
(-2.2) 		96.5
(2.2) 		84.6
(1.2) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3171
Sequence Type Exemplar sequence
Representative Public ID F07H5.8 NCBI
Target Description F07H5.8 /REP_DB=WormBase Gene ID /WP=CE03157 /TR=Q19182 /GB=CAA92662.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=keratin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063473 NCBI Caenorhabditis elegans F07H5.8 (F07H5.8) mRNA, complete cds. 11/11 None
SNAP00000026208 ENSEMBL cdna:SNAP chromosome:CEL140:II:8801008:8804695:1 11/11 None
GENEFINDER00000026214 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8801008:8804695:1 11/11 None
F07H5.8 ENSEMBL cdna:known chromosome:CEL140:II:8801994:8804800:1 gene:F07H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8801990-8804692(+) 100.0 100.0
Public Domain and Genome References
Gene Title keratin like
Ensembl F07H5.8
Entrez Gene 174407 Entrez gene
SwissProt Q19182 EMBL-EBI
WormBase CE03157 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92662 Hypothetical protein F07H5.8 [Caenorhabditis elegans] ref|NP_495874.1| F07H5.8 [Caenorhabditis elegans] 0.0
blast CAE59736 Hypothetical protein CBG03177 [Caenorhabditis briggsae] 0.0
blast CAE64591 Hypothetical protein CBG09346 [Caenorhabditis briggsae] 1.0E-60
Sequence
Target Sequence 
>C. ELEGANS:188758_AT
aaacttccagtaatgaccactccacccccgacgccatcttgccagccacaatgtcaacca
gcttgccaaccatcttgtatggagacatacacattcacgatcccaatgaatgatcagagc
tccaagcagtgtgctccagcttgtcaacctgtctgtgattcaaagtgtattcaaaattat
caatttgaaattgtaattccacaggctgacaacaactgtatgccagcttgcacccaatct
tgccaaacttcatgtgttcaacagaacagccaaagtgttccacaatgcagcacagcttgt
actgacagttgtagatcatcttgcgttgaaatcgtgaaggaatctgcagaaccaactttc
aaattggaaattgttcttaaaaaaccaatggaagaaactgtgacatgtgctccacaatgt
gctaatcagtgcgttgatcaatgtaaaactcaacttctgacccaaattgaattctgtctg
ccagcttgccagaacgcctgtcaacagaactgcccgttgcaagtcgaaccatgtgcaatg
agtggttcacaatgcaattgttcaactggattctcactttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTCCAGTAATGACCACTCCAC 143 129 1582 Antisense
GGAGACATACACATTCACGATCCCA 202 519 1662 Antisense
CAGAGCTCCAAGCAGTGTGCTCCAG 38 207 1696 Antisense
TCCAGCTTGTCAACCTGTCTGTGAT 348 589 1716 Antisense
TGCACCCAATCTTGCCAAACTTCAT 62 579 1810 Antisense
AAGTGTTCCACAATGCAGCACAGCT 360 159 1854 Antisense
GTAAAACTCAACTTCTGACCCAAAT 488 461 2024 Antisense
AATTGAATTCTGTCTGCCAGCTTGC 311 179 2046 Antisense
CTTGCCAGAACGCCTGTCAACAGAA 317 219 2066 Antisense
CAGAACTGCCCGTTGCAAGTCGAAC 493 203 2086 Antisense
GTTCAACTGGATTCTCACTTTGTGG 573 445 2141 Antisense
Sequence Source Affymetrix Proprietary Database