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[188757_at] protein phosphatase 2c

Description T19C3.7 /REP_DB=WormBase Gene ID /WP=CE04975 /GB=AAK71403.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein phosphatase 2c
Cluster 6grp_total > 02      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 60.9
(-3)
P 		90.7
(2.4)
A 		94
(3)
A 		77.7
(0)
A 		33
B 62.8
(-3)
A 		107.1
(3)
A 		71.7
(-1.8)
A 		83.7
(-0.2)
P 		44
C 49.7
(-3)
P 		85.2
(0.7)
A 		65.3
(-1.4)
P 		107.1
(3)
P 		57
avr 57.8
(-3) 		94.3
(3) 		77
(0.2) 		89.5
(2.2) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 96.1
(2)
P 		90.3
(1.3)
P 		91.9
(1.5)
P 		75.7
(-0.5)
A 		104.4
(3)
A 		54.7
(-3)
A 		50
B 59.8
(-0.4)
P 		75.6
(2.1)
P 		80.1
(2.8)
P 		57.4
(-0.7)
A 		81.2
(3)
P 		43
(-3)
P 		38
C 69.6
(1.6)
M 		84.8
(3)
P 		38.4
(-1.2)
A 		19.2
(-3)
A 		52.3
(0)
A 		39.7
(-1.1)
A 		66
avr 75.2
(1.7) 		83.6
(3) 		70.1
(0.9) 		50.8
(-2.2) 		79.3
(2.3) 		45.8
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 22.2
(1.9)
P 		19.7
(0.8)
A 		24.6
(3)
A 		11.4
(-3)
A 		13
B 20
(-0.9)
A 		26.4
(3)
A 		16.6
(-3)
A 		17.8
(-2.3)
P 		10
C 16.5
(-3)
P 		24.5
(3)
A 		22.8
(1.7)
P 		18.1
(-1.8)
P 		8
avr 19.6
(-0) 		23.5
(3) 		21.3
(1.3) 		15.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.7
(-1.6)
P 		32.1
(3)
P 		20
(-0.9)
P 		19.2
(-1.1)
A 		31.5
(2.8)
A 		13.3
(-3)
A 		19
B 20.8
(-1.1)
P 		25.2
(0.4)
P 		19.4
(-1.6)
P 		15.2
(-3)
A 		33
(3)
P 		16
(-2.7)
P 		18
C 25.8
(3)
M 		25.9
(3)
P 		9.8
(-1.4)
A 		3.9
(-3)
A 		16.9
(0.5)
A 		13.3
(-0.4)
A 		22
avr 21.4
(0.5) 		27.7
(3) 		16.4
(-1.6) 		12.8
(-3) 		27.1
(2.8) 		14.2
(-2.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8167
Sequence Type Exemplar sequence
Representative Public ID T19C3.7 NCBI
Target Description T19C3.7 /REP_DB=WormBase Gene ID /WP=CE04975 /GB=AAK71403.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein phosphatase 2c
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064824 NCBI Caenorhabditis elegans T19C3.7 (T19C3.7) mRNA, complete cds. 11/11 None
SNAP00000038888 ENSEMBL cdna:SNAP chromosome:CEL140:III:633386:636164:-1 11/11 None
GENEFINDER00000038896 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:633523:636164:-1 11/11 None
T19C3.7 ENSEMBL cdna:known chromosome:CEL140:III:634890:636164:-1 gene:T19C3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:634889-636164(-) 98.56 100.0
Public Domain and Genome References
Gene Title protein phosphatase 2c
Ensembl T19C3.7
Entrez Gene 188589 Entrez gene
SwissProt Q95QA1 EMBL-EBI
WormBase CE29055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71403 Hypothetical protein T19C3.7 [Caenorhabditis elegans] ref|NP_497225.1| T19C3.7 [Caenorhabditis elegans] 1.0E-145
blast AAK71403 Hypothetical protein T19C3.7 [Caenorhabditis elegans] ref|NP_497225.1| T19C3.7 [Caenorhabditis elegans] 1.0E-143
blast AAK71403 Hypothetical protein T19C3.7 [Caenorhabditis elegans] ref|NP_497225.1| T19C3.7 [Caenorhabditis elegans] 1.0E-137
blast AAC46598 Feminization of xx and xo animals protein 2 [Caenorhabditis elegans] ref|NP_497224.1| FEMinization of XX and XO animals family member (fem-2) [Caenorhabditis elegans] sp|P49594|FEM2_CAEEL Ca(2+)/calmodulin-dependent protein kinase phosphatase (CaM-kinase phosphatase) (CaMKPase) (Sex-determining protein fem-2) (Feminization of XX and XO animals protein 2) gb|AAC06328.1| putative protein phosphatase [Caenorhabditis elegans] 1.0E-119
blast AAC46598 Feminization of xx and xo animals protein 2 [Caenorhabditis elegans] ref|NP_497224.1| FEMinization of XX and XO animals family member (fem-2) [Caenorhabditis elegans] sp|P49594|FEM2_CAEEL Ca(2+)/calmodulin-dependent protein kinase phosphatase (CaM-kinase phosphatase) (CaMKPase) (Sex-determining protein fem-2) (Feminization of XX and XO animals protein 2) gb|AAC06328.1| putative protein phosphatase [Caenorhabditis elegans] 4.0E-98
blast AAM33404 putative protein phosphatase FEM-2 [Caenorhabditis remanei] 4.0E-63
blast AAF04557 putative PP2C protein phosphatase FEM-2 [Caenorhabditis sp. CB5161] 1.0E-46
Protein Domains
Database ID Description E-Value
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 2.29999995231628
scop a.3.1.Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 All alpha proteins; Cytochrome c; Cytochrome c; Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 2.09999990463257
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 2.9E-16
Sequence
Target Sequence 
>C. ELEGANS:188757_AT
tggcaggcccagttgcggtgaaagagagcccacgtattgctgaacgggacccaaaggtca
aaatctctgtgaatcccgaggaggaaaatgttgaacgcccctgtgtactttactcgaaaa
gtaacgagattatcaaaaaaccggatatttttgagcttcccgccggacaacgagtcattg
aagtagagaacaacgaggttcgcgacaagtataaaaaaacgttgtacgagattcggagaa
aatgcagggaacttcagaatttgggtgctgaggatgaggaaaccggtgaaatcatcgata
ctcttcttattctttacaaggacttcttcttactaaccacgtggaaaatcgataagtacg
cccagttgagaaaaaatgccgcagttcaagcttacaactcgctacccaagcttagagccg
accccgctgaattccgatgccacgtggagtttcagtatcgcgtggcaaatgagctatggg
agcatttcaaggagacatatatccacaaatatgaagcatgtaattgggcggagagggcga
aagtgaaggaatgggatcttttggacagccaagtacagacgccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCAGGCCCAGTTGCGGTGAAAGA 22 541 83 Antisense
GCCCACGTATTGCTGAACGGGACCC 207 283 110 Antisense
GCCCCTGTGTACTTTACTCGAAAAG 664 285 179 Antisense
TCCCGCCGGACAACGAGTCATTGAA 523 597 240 Antisense
AATCATCGATACTCTTCTTATTCTT 214 171 372 Antisense
CAAGGACTTCTTCTTACTAACCACG 61 39 399 Antisense
AAATCGATAAGTACGCCCAGTTGAG 287 115 428 Antisense
GCCGCAGTTCAAGCTTACAACTCGC 13 285 460 Antisense
TACAACTCGCTACCCAAGCTTAGAG 289 643 475 Antisense
GGAGTTTCAGTATCGCGTGGCAAAT 614 515 528 Antisense
GGACAGCCAAGTACAGACGCCGAAT 292 525 645 Antisense
Sequence Source Affymetrix Proprietary Database