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[188756_s_at] peptidase

Description Y116F11B.3 /REP_DB=WormBase Gene ID /WP=CE26048 /TR=Q9GRV9 /GB=CAC14390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_high1_10_10 > 05      6grp_total > 05      4grp_total > 60      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 536.6
(1.7)
P 		650.6
(3)
P 		595.3
(2.4)
P 		108.3
(-3)
A 		542
B 514.1
(3)
P 		465.5
(2.4)
P 		508.8
(2.9)
P 		32.4
(-3)
A 		482
C 397.2
(1.4)
P 		461.2
(2.2)
P 		536
(3)
P 		5.6
(-3)
A 		530
avr 482.6
(2.2) 		525.8
(2.7) 		546.7
(3) 		48.8
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 333.5
(3)
P 		155.9
(-0.4)
P 		106.9
(-1.4)
P 		85.7
(-1.8)
A 		121.7
(-1.1)
P 		21.7
(-3)
A 		312
B 193.8
(3)
P 		169.9
(1.9)
P 		107.8
(-0.9)
P 		122.8
(-0.2)
P 		64.3
(-2.9)
P 		62.3
(-3)
P 		132
C 190.5
(1.8)
P 		221.4
(3)
P 		97.5
(-1.8)
A 		102.8
(-1.6)
A 		86.6
(-2.3)
P 		67.7
(-3)
A 		154
avr 239.3
(3) 		182.4
(1.2) 		104.1
(-1.3) 		103.8
(-1.3) 		90.9
(-1.7) 		50.6
(-3) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 195.4
(3)
P 		141.2
(1.2)
P 		155.6
(1.7)
P 		15.8
(-3)
A 		180
B 164
(3)
P 		115
(1.1)
P 		117.9
(1.2)
P 		6.9
(-3)
A 		157
C 131.5
(1.2)
P 		132.6
(1.3)
P 		186.8
(3)
P 		0.9
(-3)
A 		186
avr 163.6
(3) 		129.6
(1.7) 		153.4
(2.6) 		7.9
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 61.5
(3)
P 		55.4
(2.3)
P 		23.3
(-1.1)
P 		21.7
(-1.2)
A 		36.7
(0.4)
P 		5.3
(-3)
A 		56
B 67.4
(3)
P 		56.6
(1.5)
P 		26.2
(-2.6)
P 		32.5
(-1.7)
P 		26.1
(-2.6)
P 		23.2
(-3)
P 		44
C 70.6
(3)
P 		67.6
(2.6)
P 		24.8
(-2.5)
A 		20.7
(-3)
A 		28
(-2.1)
P 		22.7
(-2.8)
A 		50
avr 66.5
(3) 		59.9
(2.2) 		24.8
(-2.1) 		25
(-2) 		30.3
(-1.4) 		17.1
(-3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188756_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13578
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.3 NCBI
Target Description Y116F11B.3 /REP_DB=WormBase Gene ID /WP=CE26048 /TR=Q9GRV9 /GB=CAC14390.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075440 NCBI Caenorhabditis elegans Y116F11B.3 (peptidase) mRNA, complete cds. 11/11 None
SNAP00000031759 ENSEMBL cdna:SNAP chromosome:CEL140:V:19820762:19828087:-1 11/11 None
GENEFINDER00000031773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19818610:19828087:-1 11/11 None
Y116F11B.3.2 ENSEMBL cdna:known chromosome:CEL140:V:19820395:19828098:-1 gene:Y116F11B.3 11/11 None
Y116F11B.3.1 ENSEMBL cdna:known chromosome:CEL140:V:19820750:19828098:-1 gene:Y116F11B.3 11/11 None
Y116F11B.3.3 ENSEMBL cdna:known chromosome:CEL140:V:19820762:19828096:-1 gene:Y116F11B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19820761-19828087(-) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Gene Symbol pcp-4
Ensembl Y116F11B.3
Entrez Gene 180301 Entrez gene
SwissProt Q9GRV9 EMBL-EBI
WormBase CE26048 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14390 Hypothetical protein Y116F11B.3 [Caenorhabditis elegans] ref|NP_507841.1| Y116F11B.3 [Caenorhabditis elegans] 0.0
blast CAB05185 Hypothetical protein F23B2.11 [Caenorhabditis elegans] ref|NP_501598.1| Prolyl Carboxy Peptidase like family member (pcp-3) [Caenorhabditis elegans] 0.0
blast CAE74127 Hypothetical protein CBG21793 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188756_S_AT
gacgcttctctggacatggcagacttgtacggagtatgggggatttcagtcggcggattc
aggaagcggattgtttggatccccggtgccggttagtttcctcatccaaatgtgcatgga
tctcttcggcaacacgtatgaccgctcaaaaatcgattccctcatcgatttcaccaacta
caagtacggaggacgtgacaacttcaagggctcgaatgtagtattcatcaatggaaacat
cgacccgtaccatgtcctagggctctttaactccccggatagctcagtagtgtcctacct
tatcgatggaagctcccactgtgcagacatgttcccggctagggattcagatgttcccgg
gttgaaggtggccagggatcttgtagatcaaaatattggggtctggttggggggtcaggt
gaatattaccaccactacagctactacgacctcgaattcaactagctatccttcaacgtt
gtactctttggagcccaccacaactaaatctacatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTTCTCTGGACATGGCAGACT 179 381 2568 Antisense
GTATGGGGGATTTCAGTCGGCGGAT 51 457 2601 Antisense
GGATCTCTTCGGCAACACGTATGAC 497 511 2685 Antisense
CCTCATCGATTTCACCAACTACAAG 58 261 2727 Antisense
ACCATGTCCTAGGGCTCTTTAACTC 613 85 2816 Antisense
TTAACTCCCCGGATAGCTCAGTAGT 249 683 2834 Antisense
TATCGATGGAAGCTCCCACTGTGCA 79 659 2868 Antisense
ACTACAGCTACTACGACCTCGAATT 516 101 3001 Antisense
ACCTCGAATTCAACTAGCTATCCTT 59 89 3016 Antisense
AGCTATCCTTCAACGTTGTACTCTT 83 79 3031 Antisense
AGCCCACCACAACTAAATCTACATC 692 81 3059 Antisense
Sequence Source Affymetrix Proprietary Database