[Home] | [Total List]

[188755_at] 7TM receptor

Description F13A7.2 /REP_DB=WormBase Gene ID /WP=CE15809 /TR=O17800 /GB=CAB07574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 09      4grp_total > 07      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 7.8
(-0.8)
A 		14.5
(2.6)
A 		3.5
(-3)
A 		15.2
(3)
A 		12
B 4.6
(-3)
A 		8.8
(-2)
A 		30.6
(3)
A 		6
(-2.7)
A 		26
C 23.3
(3)
A 		2.6
(-3)
A 		7.4
(-1.6)
A 		15.3
(0.7)
A 		21
avr 11.9
(0.8) 		8.6
(-3) 		13.8
(3) 		12.2
(1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 31
(0.1)
A 		8.1
(-3)
A 		52.5
(3)
A 		45.8
(2.1)
A 		11
(-2.6)
A 		21.6
(-1.2)
A 		44
B 35.3
(2.4)
A 		23.1
(0.4)
A 		3.2
(-3)
A 		27.5
(1.1)
A 		38.7
(3)
A 		30.5
(1.6)
A 		36
C 37.7
(3)
A 		36
(2.7)
A 		3.6
(-3)
A 		35.2
(2.6)
A 		17.3
(-0.6)
A 		5.4
(-2.7)
A 		34
avr 34.7
(2.5) 		22.4
(-1.9) 		19.8
(-2.8) 		36.2
(3) 		22.3
(-1.9) 		19.2
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.8
(2.2)
A 		3.1
(3)
A 		0.9
(-3)
A 		2.2
(0.5)
A 		2
B 1.5
(-2.8)
A 		2.2
(-2.1)
A 		7.1
(3)
A 		1.3
(-3)
A 		6
C 7.7
(3)
A 		0.8
(-3)
A 		2.6
(-1.4)
A 		2.6
(-1.4)
A 		7
avr 4
(3) 		2
(-3) 		3.5
(1.5) 		2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.7
(-1.1)
A 		2.9
(-3)
A 		11.4
(2.9)
A 		11.6
(3)
A 		3.3
(-2.7)
A 		5.3
(-1.3)
A 		9
B 12.3
(1.6)
A 		7.7
(-0.2)
A 		0.8
(-3)
A 		7.3
(-0.4)
A 		15.7
(3)
A 		11.4
(1.3)
A 		15
C 14
(3)
A 		11
(1.6)
A 		0.9
(-3)
A 		7.1
(-0.2)
A 		5.6
(-0.8)
A 		1.8
(-2.6)
A 		13
avr 10.7
(3) 		7.2
(-0.3) 		4.4
(-3) 		8.7
(1.1) 		8.2
(0.6) 		6.2
(-1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14562
Sequence Type Exemplar sequence
Representative Public ID F13A7.2 NCBI
Target Description F13A7.2 /REP_DB=WormBase Gene ID /WP=CE15809 /TR=O17800 /GB=CAB07574.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074742 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-63) (srd-63) mRNA, complete cds. 11/11 None
GENEFINDER00000025242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16395065:16397649:-1 11/11 None
F13A7.2 ENSEMBL cdna:known chromosome:CEL140:V:16395065:16396411:-1 gene:F13A7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025228 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16395064-16396411(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol srd-63
Ensembl F13A7.2
Entrez Gene 184399 Entrez gene
SwissProt O17800 EMBL-EBI
WormBase CE34539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07574 Hypothetical protein F13A7.2 [Caenorhabditis elegans] ref|NP_507143.2| Serpentine Receptor, class D (delta) family member (srd-63) [Caenorhabditis elegans] sp|O17800|SRD63_CAEEL Serpentine receptor class delta-63 (Protein srd-63) 0.0
blast CAB07571 Hypothetical protein F13A7.11 [Caenorhabditis elegans] ref|NP_507144.1| F13A7.11 [Caenorhabditis elegans] 1.0E-124
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-111
blast AAB94968 Serpentine receptor, class d (delta) protein 69 [Caenorhabditis elegans] ref|NP_497542.1| Serpentine Receptor, class D (delta) family member (srd-69) [Caenorhabditis elegans] 1.0E-110
blast AAF39775 Serpentine receptor, class d (delta) protein 65 [Caenorhabditis elegans] ref|NP_497514.1| Serpentine Receptor, class D (delta) family member (srd-65) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507143.2 7 10-32,44-63,83-105,126-148,190-208,238-260,270-292
F13A7.2 7 10-32,44-63,83-105,126-148,190-208,238-260,270-292
GENEFINDER00000025242 7 239-261,273-292,312-334,355-377,419-437,467-489,499-521
Sequence
Target Sequence 
>C. ELEGANS:188755_AT
ctgtgtctcaagtatctcgacgcgaagaagatagtaataataacttcaccgcaaaggcac
ctagaagtcagcatggaaactttatccctccaccctaattttgactacacaccttattta
acgtttgggggattcagccaagctcagaaagaacttcttgataaagctgcaatgagtttg
tcactgatctcgatgtattatccactaattggtacttattggaagcataaggcgatgaaa
atgttgaaatcacacatgtcaccaaacacgtcggatgcaacgcgagcgatgcttcagacg
ttgataaagggcttgaattttcaaatccttctacccatgctacgctacataccactgaca
gctatatatttcatgatcaagtacacaggagaacaatttctaatttctcaatacacaata
acagtgctgggaacaattccgtgtatccttgatccacttgtacaaatttattttattcga
gatgcgattcgaaagtttttagcatgcaactcgagcccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTGTCTCAAGTATCTCGACGCGA 164 241 358 Antisense
AATAACTTCACCGCAAAGGCACCTA 368 127 396 Antisense
AGCATGGAAACTTTATCCCTCCACC 541 77 427 Antisense
CTCCACCCTAATTTTGACTACACAC 22 237 445 Antisense
GACTACACACCTTATTTAACGTTTG 285 371 460 Antisense
CACACATGTCACCAAACACGTCGGA 334 195 608 Antisense
ACACGTCGGATGCAACGCGAGCGAT 552 109 623 Antisense
GCGAGCGATGCTTCAGACGTTGATA 140 289 639 Antisense
GCTACGCTACATACCACTGACAGCT 42 303 696 Antisense
AATTCCGTGTATCCTTGATCCACTT 1 179 792 Antisense
TTTTTAGCATGCAACTCGAGCCCAG 153 673 853 Antisense
Sequence Source Affymetrix Proprietary Database