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[188754_at] zinc finger

Description T27B1.2 /REP_DB=WormBase Gene ID /WP=CE05028 /TR=Q22829 /GB=AAA82331.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      6grp_highest_nonorm > 61      6grp_total > 02      4grp_total > 51      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 276.2
(-3)
P 		526.8
(3)
P 		398
(-0.1)
P 		291.1
(-2.6)
A 		251
B 393.9
(2.1)
P 		425.1
(3)
P 		362.9
(1.1)
P 		224.8
(-3)
A 		200
C 316.1
(-0.5)
P 		455
(3)
P 		427.6
(2.3)
A 		214.9
(-3)
A 		240
avr 328.7
(-0.7) 		469
(3) 		396.2
(1.1) 		243.6
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 407
(0.1)
P 		561.9
(3)
P 		296.4
(-2)
P 		339.6
(-1.2)
P 		395.4
(-0.1)
P 		241.9
(-3)
P 		320
B 395.7
(0.4)
P 		528.8
(3)
P 		416.7
(0.8)
P 		407.9
(0.6)
P 		318.8
(-1.1)
P 		223.9
(-3)
P 		305
C 304
(-1.4)
P 		469.7
(3)
P 		394.7
(1)
P 		283.9
(-1.9)
P 		343.2
(-0.4)
P 		243.3
(-3)
P 		226
avr 368.9
(-0.2) 		520.1
(3) 		369.3
(-0.2) 		343.8
(-0.7) 		352.5
(-0.5) 		236.4
(-3) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 100.6
(1.8)
P 		114.4
(3)
P 		104
(2.1)
P 		42.6
(-3)
A 		72
B 125.6
(3)
P 		105
(1.4)
P 		84.1
(-0.2)
P 		47.9
(-3)
A 		78
C 104.6
(0.6)
P 		130.8
(2)
P 		149
(3)
A 		36.2
(-3)
A 		113
avr 110.3
(2.5) 		116.7
(3) 		112.4
(2.7) 		42.2
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 75
(-2.3)
P 		199.9
(3)
P 		64.5
(-2.8)
P 		86.1
(-1.8)
P 		119.3
(-0.4)
P 		58.9
(-3)
P 		141
B 137.7
(0.5)
P 		176
(3)
P 		101.2
(-1.9)
P 		108
(-1.4)
P 		129.5
(-0)
P 		83.5
(-3)
P 		93
C 112.7
(0.9)
P 		143.3
(3)
P 		100.4
(0)
P 		57.1
(-3)
P 		111.1
(0.8)
P 		81.5
(-1.3)
P 		86
avr 108.5
(-0.9) 		173.1
(3) 		88.7
(-2.1) 		83.7
(-2.4) 		120
(-0.2) 		74.6
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17905
Sequence Type Exemplar sequence
Representative Public ID T27B1.2 NCBI
Target Description T27B1.2 /REP_DB=WormBase Gene ID /WP=CE05028 /TR=Q22829 /GB=AAA82331.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078279 NCBI Caenorhabditis elegans T27B1.2 (T27B1.2) mRNA, complete cds. 11/11 None
SNAP00000003299 ENSEMBL cdna:SNAP chromosome:CEL140:X:16537605:16539459:1 11/11 None
GENEFINDER00000003301 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16537605:16539459:1 11/11 None
T27B1.2 ENSEMBL cdna:known chromosome:CEL140:X:16536148:16540109:1 gene:T27B1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16536147-16539459(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger
Ensembl T27B1.2
Entrez Gene 181714 Entrez gene
SwissProt Q22829 EMBL-EBI
WormBase CE38558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510680 T27B1.2 [Caenorhabditis elegans] gb|AAA82331.2| Hypothetical protein T27B1.2 [Caenorhabditis elegans] 0.0
blast T34392 hypothetical protein T27B1.2 - Caenorhabditis elegans 0.0
blast CAE69963 Hypothetical protein CBG16356 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Sequence
Target Sequence 
>C. ELEGANS:188754_AT
acactacctctcttgattcattgatgcagagtcagaatcaaaatttccttatgcaacttt
atggctatagcgacgatggtcgccacaacggaggcatgctgtcgctggacgacacgatgc
tctcaaatctcagtgattctaaatcagactctggctcatcatcgggtggattgagcattc
aacttccaatgcaaactattaacatgcttaacttccggaatcttggcacgcaacaattgc
cgccagtgcaccaactcgcctcctccttgccttcagtgtcatctggaatggattatgtaa
atgtaaaccagcatgactctcactacatcgtctcccaacccgacatgatgctcggaaacc
agcccctctaccacaatggaagcttcgccaacattgaaaagagcaacccacacaacaatc
agttcacaattgacagctgtgtactgctgccatcttcaagacaagattatcccttcgact
ataccatggtcaaccagcagtatccaatgcaagagcaagttcacgatcagacggtcggag
tgagtgttgtgcagcagcactacgccgaacaagctcatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTACCTCTCTTGATTCATTGAT 304 111 1247 Antisense
GATGGTCGCCACAACGGAGGCATGC 117 409 1321 Antisense
AAATCAGACTCTGGCTCATCATCGG 536 117 1387 Antisense
TAACTTCCGGAATCTTGGCACGCAA 185 637 1455 Antisense
TTGGCACGCAACAATTGCCGCCAGT 43 709 1469 Antisense
TCCTTGCCTTCAGTGTCATCTGGAA 411 591 1510 Antisense
GTAAACCAGCATGACTCTCACTACA 568 461 1549 Antisense
CTCCCAACCCGACATGATGCTCGGA 31 233 1578 Antisense
TGTACTGCTGCCATCTTCAAGACAA 86 559 1686 Antisense
TATCCCTTCGACTATACCATGGTCA 48 659 1714 Antisense
GCACTACGCCGAACAAGCTCATGCT 58 317 1803 Antisense
Sequence Source Affymetrix Proprietary Database