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[188753_s_at]

Description Y111B2A.10A /REP_DB=WormBase Gene ID /WP=CE26626 /GB=CAC35838.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 56      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 85      6grp_total > 56      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 726
1 2 3 4 range
A 1096.7
(3)
P 		485.2
(-3)
P 		640.5
(-1.5)
P 		738
(-0.5)
P 		612
B 1046.6
(3)
P 		444.5
(-3)
P 		565.6
(-1.8)
P 		674.7
(-0.7)
P 		602
C 760.1
(2.3)
P 		370.4
(-3)
P 		518.6
(-1)
P 		814.3
(3)
P 		444
avr 967.8
(3) 		433.4
(-3) 		574.9
(-1.4) 		742.3
(0.5) 		534

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 829.6
(1.7)
P 		782.7
(0.8)
P 		607
(-2.7)
P 		735.2
(-0.2)
P 		594.4
(-3)
P 		893
(3)
P 		299
B 677.3
(-0.5)
P 		736.8
(0.9)
P 		565.8
(-3)
P 		583.9
(-2.6)
P 		653.3
(-1)
P 		832.1
(3)
P 		266
C 678.7
(-1.4)
P 		813.4
(0.5)
P 		909.1
(1.8)
P 		559
(-3)
P 		705.6
(-1)
P 		1000.6
(3)
P 		442
avr 728.5
(-0.8) 		777.6
(0.2) 		694
(-1.6) 		626
(-3) 		651.1
(-2.5) 		908.6
(3) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 399.3
(3)
P 		105.3
(-3)
P 		167.4
(-1.7)
P 		108
(-2.9)
P 		294
B 333.8
(3)
P 		109.8
(-3)
P 		131.1
(-2.4)
P 		143.8
(-2.1)
P 		224
C 251.6
(3)
P 		106.5
(-3)
P 		180.7
(0.1)
P 		137.3
(-1.7)
P 		145
avr 328.2
(3) 		107.2
(-3) 		159.7
(-1.6) 		129.7
(-2.4) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 152.9
(-2.2)
P 		278.4
(3)
P 		132.2
(-3)
P 		186.5
(-0.8)
P 		179.4
(-1.1)
P 		217.4
(0.5)
P 		146
B 235.7
(0.4)
P 		245.2
(0.7)
P 		137.4
(-3)
P 		154.7
(-2.4)
P 		265.4
(1.4)
P 		310.3
(3)
P 		173
C 251.6
(0.8)
P 		248.2
(0.7)
P 		231.4
(0.2)
P 		112.4
(-3)
P 		228.3
(0.1)
P 		334.9
(3)
P 		223
avr 213.4
(-0.3) 		257.3
(1.7) 		167
(-2.3) 		151.2
(-3) 		224.4
(0.2) 		287.5
(3) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188753_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6434
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.10A NCBI
Target Description Y111B2A.10A /REP_DB=WormBase Gene ID /WP=CE26626 /GB=CAC35838.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067240(11), NM_067239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067240 NCBI Caenorhabditis elegans Y111B2A.10b (Y111B2A.10) mRNA, complete cds. 11/11 None
NM_067239 NCBI Caenorhabditis elegans Y111B2A.10a (Y111B2A.10) mRNA, complete cds. 11/11 A 
SNAP00000006157 ENSEMBL cdna:SNAP chromosome:CEL140:III:12596020:12598403:-1 11/11 None
GENEFINDER00000006279 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12596020:12598762:-1 11/11 None
Y111B2A.10b.3 ENSEMBL cdna:known chromosome:CEL140:III:12595932:12598472:-1 gene:Y111B2A.10 11/11 None
Y111B2A.10b.2 ENSEMBL cdna:known chromosome:CEL140:III:12595932:12598040:-1 gene:Y111B2A.10 11/11 A 
Y111B2A.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:12595932:12598485:-1 gene:Y111B2A.10 11/11 A 
Y111B2A.10a ENSEMBL cdna:known chromosome:CEL140:III:12596020:12598446:-1 gene:Y111B2A.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12596015-12598399(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y111B2A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35838 Hypothetical protein Y111B2A.10a [Caenorhabditis elegans] ref|NP_499640.1| Y111B2A.10a [Caenorhabditis elegans] 0.0
blast CAC35839 Hypothetical protein Y111B2A.10b [Caenorhabditis elegans] ref|NP_499641.2| Y111B2A.10b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.7E-6
Sequence
Target Sequence 
>C. ELEGANS:188753_S_AT
gcaaggagctattcccatcaacatctgtcaaaactcacgaatggtactgcaagaataggg
agaaaattattgaaaaacagcgagtatcgaagattctgaaagtacaaagtttgccgtcaa
gcccagctctttccaccgtcagttatgcatcattctcaagctgtcagcctgggccaatca
caagcccagtctcctatagggataaatcgtgtcaagtgtgtggagagagcttcgcgagcc
gacaatcaatgctccggcatgttggtagaaaacatccagatgccaagaacgatccaaatg
tcacggctgtgagatacattagcgctgaatcgcccaagcatccatatgcttgcattgaat
gcggaaaacgattcacaacggtcaccgctttgtcaacacacaaggctcgtgttcattcac
aatccaatcgctttgaatgcacaatttgccacaaatcctatccggttccatcagaattga
ggaagcacatcaaaagagttcatgagaaggatgcgcccaaatctcgatcagcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGGAGCTATTCCCATCAACATC 448 321 737 Antisense
TTCCACCGTCAGTTATGCATCATTC 424 701 867 Antisense
CTGTCAGCCTGGGCCAATCACAAGC 171 239 897 Antisense
ATCACAAGCCCAGTCTCCTATAGGG 18 27 913 Antisense
GTGTGTGGAGAGAGCTTCGCGAGCC 165 489 952 Antisense
GAACGATCCAAATGTCACGGCTGTG 323 345 1023 Antisense
ACATTAGCGCTGAATCGCCCAAGCA 473 105 1052 Antisense
GATTCACAACGGTCACCGCTTTGTC 301 431 1106 Antisense
AAGGCTCGTGTTCATTCACAATCCA 194 161 1138 Antisense
AAATCCTATCCGGTTCCATCAGAAT 127 117 1189 Antisense
ATGCGCCCAAATCTCGATCAGCATT 321 41 1247 Antisense
Sequence Source Affymetrix Proprietary Database