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[188751_at]

Description T05H4.9 /REP_DB=WormBase Gene ID /WP=CE13285 /TR=O16514 /GB=AAB66015.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster 6grp_total > 25      4grp_total > 35      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 43.2
(-3)
A 		113.1
(3)
A 		75.5
(-0.2)
A 		70
(-0.7)
A 		70
B 27.3
(-3)
A 		60.1
(3)
A 		40
(-0.7)
A 		43.8
(0)
A 		33
C 78.3
(3)
A 		73
(2.5)
A 		19.7
(-3)
A 		61.3
(1.3)
A 		59
avr 49.6
(-2.3) 		82.1
(3) 		45.1
(-3) 		58.4
(-0.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 72.5
(2.3)
A 		77.3
(2.7)
A 		80.9
(3)
A 		10.6
(-3)
A 		42.3
(-0.3)
A 		39.7
(-0.5)
A 		70
B 57.1
(0.3)
A 		82.9
(3)
A 		62.9
(0.9)
A 		33
(-2.2)
A 		43.2
(-1.2)
A 		25.7
(-3)
A 		57
C 102.2
(2.2)
A 		110.8
(3)
A 		59.2
(-1.8)
A 		54.5
(-2.2)
A 		45.9
(-3)
A 		50.8
(-2.5)
A 		65
avr 77.3
(1.6) 		90.3
(3) 		67.7
(0.6) 		32.7
(-3) 		43.8
(-1.8) 		38.7
(-2.4) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.7
(-0.7)
A 		24.5
(3)
A 		19.7
(1)
A 		10.2
(-3)
A 		14
B 8.7
(-3)
A 		14.8
(3)
A 		9.3
(-2.4)
A 		9.3
(-2.4)
A 		6
C 25.9
(3)
A 		21
(1.5)
A 		6.8
(-3)
A 		10.3
(-1.9)
A 		19
avr 16.8
(1.1) 		20.1
(3) 		11.9
(-1.8) 		9.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 13.4
(-0.4)
A 		27.5
(3)
A 		17.6
(0.6)
A 		2.7
(-3)
A 		12.7
(-0.6)
A 		9.7
(-1.3)
A 		25
B 19.9
(0.5)
A 		27.6
(3)
A 		15.3
(-0.9)
A 		8.8
(-3)
A 		17.6
(-0.2)
A 		9.6
(-2.7)
A 		19
C 37.9
(3)
A 		33.8
(2.1)
A 		15.1
(-2.1)
A 		11
(-3)
A 		14.9
(-2.1)
A 		17
(-1.7)
A 		27
avr 23.7
(1.4) 		29.6
(3) 		16
(-0.7) 		7.5
(-3) 		15.1
(-0.9) 		12.1
(-1.8) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188751_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12168
Sequence Type Exemplar sequence
Representative Public ID T05H4.9 NCBI
Target Description T05H4.9 /REP_DB=WormBase Gene ID /WP=CE13285 /TR=O16514 /GB=AAB66015.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000040302 ENSEMBL cdna:SNAP chromosome:CEL140:V:6421596:6423369:-1 10/11 None
GENEFINDER00000040323 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6420170:6426749:-1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6421514-6423369(-) 41.05 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66015 Hypothetical protein T05H4.9 [Caenorhabditis elegans] 0.0
blast NP_504629 T05H4.10 [Caenorhabditis elegans] gb|AAB66016.2| Hypothetical protein T05H4.10 [Caenorhabditis elegans] 0.0
blast CAE71874 Hypothetical protein CBG18929 [Caenorhabditis briggsae] 0.0
blast NP_496989 R06A4.3 [Caenorhabditis elegans] 1.0E-176
blast T21576 hypothetical protein F30F8.4 - Caenorhabditis elegans 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 4.6E-38
Pfam IPR004875 EMBL-EBI CENP-B protein 4.6E-7
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 5.6E-38
Pfam IPR004875 EMBL-EBI CENP-B protein 4.6E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040323 1 440-462
Sequence
Target Sequence 
>C. ELEGANS:188751_AT
caagacttgtgtggctcatgcttcgctcccaaaaaggctcttgatgatagttgatagttg
gccaagttttaaggatcacgctacaattcaacaatgctttcctccaggatatgacgtcac
tataaagaacattccacctcatacgacttcaatgatacagcctcttgacagccattggaa
tggcccgtggaaaaacttgatcaagaagttcaccacccacgtactcaacttccatccaga
tttcctcattgcaaatcggaacaatgaaatttggatgatttctctgctttatcaccaggt
ttctgctcgcgagttccaatcattcatgatgtattcttggaagcgttgtggctacttgga
ttcaactgacacgtttttgaccccttcacagcattgttttggacaagtcgaaggccaatt
gtgttacttcgcaggatgttataatcttgcattcattttctgtgcccgttgtaaagaata
tatctgtttctcacattttattgtcgacgaaaagcatctctgcccaaattgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGACTTGTGTGGCTCATGCTTCG 307 185 1065 Antisense
TTCAACAATGCTTTCCTCCAGGATA 630 683 1151 Antisense
TAAAGAACATTCCACCTCATACGAC 150 641 1187 Antisense
CAGCCTCTTGACAGCCATTGGAATG 290 201 1222 Antisense
GATTTCTCTGCTTTATCACCAGGTT 682 427 1341 Antisense
TTTCTGCTCGCGAGTTCCAATCATT 499 671 1364 Antisense
TCAACTGACACGTTTTTGACCCCTT 78 631 1426 Antisense
ACCCCTTCACAGCATTGTTTTGGAC 165 67 1444 Antisense
AGGCCAATTGTGTTACTTCGCAGGA 487 53 1476 Antisense
TCTTGCATTCATTTTCTGTGCCCGT 131 619 1509 Antisense
AAAGCATCTCTGCCCAAATTGTCGT 22 125 1575 Antisense
Sequence Source Affymetrix Proprietary Database