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[188748_s_at] Hexokinases

Description H25P06.1 /REP_DB=WormBase Gene ID /WP=CE18823 /TR=Q9XU15 /GB=CAB07234.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Hexokinases
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_high_8_8 > 49      6grp_highest_nonorm > 81      6grp_total > 05      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 341.3
(3)
P 		219.3
(0.1)
P 		165.3
(-1.2)
P 		88
(-3)
A 		253
B 413.9
(3)
P 		219.5
(-1.3)
P 		254
(-0.5)
P 		139.9
(-3)
P 		274
C 309.6
(3)
P 		252.7
(1.6)
P 		219.5
(0.8)
P 		60.5
(-3)
P 		249
avr 354.9
(3) 		230.5
(0.1) 		212.9
(-0.3) 		96.1
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 264.9
(3)
P 		264.5
(3)
P 		172
(-3)
P 		192.3
(-1.7)
P 		193.5
(-1.6)
P 		238.8
(1.3)
P 		93
B 286.9
(1.7)
P 		277.1
(1.3)
P 		312.6
(3)
P 		231.9
(-1)
P 		308.4
(2.8)
P 		190.6
(-3)
P 		122
C 364.8
(3)
P 		274
(0.3)
P 		270.3
(0.1)
P 		218
(-1.4)
P 		239.2
(-0.8)
P 		166.4
(-3)
P 		198
avr 305.5
(3) 		271.9
(1.1) 		251.6
(-0) 		214.1
(-2.1) 		247
(-0.3) 		198.6
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 124.3
(3)
P 		47.6
(-1.1)
P 		43.2
(-1.4)
P 		12.9
(-3)
A 		111
B 132
(3)
P 		54.2
(-1.6)
P 		58.9
(-1.3)
P 		29.8
(-3)
P 		102
C 102.5
(3)
P 		72.7
(1.1)
P 		76.5
(1.3)
P 		10.2
(-3)
P 		92
avr 119.6
(3) 		58.2
(-0.6) 		59.5
(-0.5) 		17.6
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 48.8
(-1.8)
P 		94.1
(3)
P 		37.5
(-3)
P 		48.8
(-1.8)
P 		58.4
(-0.8)
P 		58.1
(-0.8)
P 		57
B 99.8
(0.6)
P 		92.2
(-0.1)
P 		75.9
(-1.6)
P 		61.4
(-3)
P 		125.3
(3)
P 		71.1
(-2.1)
P 		64
C 135.2
(3)
P 		83.6
(-0.4)
P 		68.8
(-1.4)
P 		43.8
(-3)
P 		77.4
(-0.8)
P 		55.7
(-2.2)
P 		91
avr 94.6
(3) 		90
(2.4) 		60.7
(-1.7) 		51.3
(-3) 		87
(1.9) 		61.6
(-1.6) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188748_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.824
Sequence Type Exemplar sequence
Representative Public ID H25P06.1 NCBI
Target Description H25P06.1 /REP_DB=WormBase Gene ID /WP=CE18823 /TR=Q9XU15 /GB=CAB07234.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Hexokinases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060504 NCBI Caenorhabditis elegans H25P06.1 (Hexokinases) mRNA, complete cds. 11/11 None
SNAP00000026536 ENSEMBL cdna:SNAP chromosome:CEL140:I:11319945:11331107:-1 10/11 None
GENEFINDER00000026541 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11319945:11325272:-1 11/11 None
H25P06.1.2 ENSEMBL cdna:known chromosome:CEL140:I:11319652:11331234:-1 gene:H25P06.1 11/11 None
H25P06.1.1 ENSEMBL cdna:known chromosome:CEL140:I:11319652:11331240:-1 gene:H25P06.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11319875-11331147(-) 100.0 100.0
Public Domain and Genome References
Gene Title Hexokinases
Ensembl H25P06.1
Entrez Gene 173022 Entrez gene
SwissProt Q9XU15 EMBL-EBI
WormBase CE18823 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4396 hexokinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07234 Hypothetical protein H25P06.1 [Caenorhabditis elegans] ref|NP_492905.1| H25P06.1 [Caenorhabditis elegans] 0.0
blast CAE73047 Hypothetical protein CBG20417 [Caenorhabditis briggsae] 0.0
blast AAR13363 hexokinase [Brugia malayi] 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR001312 EMBL-EBI Hexokinase 3.0E-87
Pfam IPR001312 EMBL-EBI Hexokinase 3.0E-67
Pfam IPR001312 EMBL-EBI Hexokinase 3.0E-87
Pfam IPR001312 EMBL-EBI Hexokinase 1.1E-18
Pfam IPR001312 EMBL-EBI Hexokinase 2.6E-23
Pfam IPR001312 EMBL-EBI Hexokinase 4.4E-7
Pfam IPR001312 EMBL-EBI Hexokinase 6.1E-35
Sequence
Target Sequence 
>C. ELEGANS:188748_S_AT
aattggctcgaaaatgctccgtactcgaaatacgtttccgacgaaatatatttccgaaat
tttgcacgacgattgcggtgtctacagtaatacccgacagatcatggacgagctcggcat
cgaaggagccacttttagcgatatgcttctgctccgtgaagtttgtgtcgttgtgtcgag
gcggagtgcgaatttggcggctgcagcaatcgcgtgtgtcctgaatcgtgtccgccggcc
gaatatgctcgttgcaatcgatggatccacgtataaataccatccattcttcaatcattg
ggtgtgcgagaagattcgagaacttctggatcctgggcttgatttcaaaatcgtccaaac
cggtgatggctcaggccgtggagccgcactcatcgccgcaatcgtttcgagagtcaagcg
agaagaggagaagcggctgaaggatctggaagcccaacggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGGCTCGAAAATGCTCCGTACT 156 179 1065 Antisense
GATCATGGACGAGCTCGGCATCGAA 707 419 1164 Antisense
TTTTAGCGATATGCTTCTGCTCCGT 437 675 1197 Antisense
GCTCCGTGAAGTTTGTGTCGTTGTG 290 297 1215 Antisense
GGAGTGCGAATTTGGCGGCTGCAGC 385 517 1247 Antisense
CAATCGCGTGTGTCCTGAATCGTGT 547 181 1271 Antisense
CCGGCCGAATATGCTCGTTGCAATC 235 263 1299 Antisense
AAATACCATCCATTCTTCAATCATT 328 117 1339 Antisense
CAAACCGGTGATGGCTCAGGCCGTG 648 191 1420 Antisense
CTCATCGCCGCAATCGTTTCGAGAG 321 229 1453 Antisense
GAAGGATCTGGAAGCCCAACGGCTC 366 333 1503 Antisense
Sequence Source Affymetrix Proprietary Database