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[188746_at] 7TM receptor

Description F36G9.5 /REP_DB=WormBase Gene ID /WP=CE15982 /TR=O45474 /GB=CAB04335.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 21      4grp_total > 0      6grp_cgc > 52      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 9.4
(-2.1)
A 		3
(-3)
A 		21.5
(-0.4)
A 		46
(3)
A 		43
B 25.1
(1.3)
A 		3.5
(-3)
A 		33.6
(3)
A 		9.1
(-1.9)
A 		30
C 23.6
(-1.3)
A 		9.4
(-2.7)
A 		5.9
(-3)
A 		67.7
(3)
A 		62
avr 19.4
(-0.6) 		5.3
(-3) 		20.3
(-0.5) 		40.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6.1
(-2.4)
A 		25.9
(0.4)
A 		44.8
(3)
A 		1.8
(-3)
A 		35
(1.6)
A 		8.6
(-2.1)
A 		43
B 44.8
(3)
A 		39.1
(2.2)
A 		29.1
(0.7)
A 		9.9
(-2.1)
A 		25.9
(0.2)
A 		3.8
(-3)
A 		41
C 15.5
(-1.6)
A 		37.9
(1)
A 		3.4
(-3)
A 		55
(3)
A 		10.1
(-2.2)
A 		6.6
(-2.6)
A 		52
avr 22.1
(0.4) 		34.3
(3) 		25.8
(1.2) 		22.2
(0.4) 		23.7
(0.7) 		6.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.4
(-0.2)
A 		0.6
(-3)
A 		5.6
(1.9)
A 		6.7
(3)
A 		6
B 8
(3)
A 		0.9
(-3)
A 		7.8
(2.8)
A 		1.9
(-2.2)
A 		7
C 7.8
(0.7)
A 		2.7
(-2.6)
A 		2.1
(-3)
A 		11.4
(3)
A 		9
avr 6.4
(2.7) 		1.4
(-3) 		5.2
(1.3) 		6.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.1
(-2.6)
A 		9.2
(2.2)
A 		9.8
(2.5)
A 		0.5
(-3)
A 		10.6
(3)
A 		2.1
(-2)
A 		10
B 15.6
(3)
A 		13
(1.9)
A 		7.1
(-0.6)
A 		2.6
(-2.5)
A 		10.5
(0.8)
A 		1.4
(-3)
A 		14
C 5.7
(-0.3)
A 		11.6
(3)
A 		0.9
(-3)
A 		11.1
(2.7)
A 		3.3
(-1.7)
A 		2.2
(-2.3)
A 		11
avr 7.5
(0.6) 		11.3
(3) 		5.9
(-0.4) 		4.7
(-1.2) 		8.1
(1) 		1.9
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14342
Sequence Type Exemplar sequence
Representative Public ID F36G9.5 NCBI
Target Description F36G9.5 /REP_DB=WormBase Gene ID /WP=CE15982 /TR=O45474 /GB=CAB04335.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074604 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-22) (sru-22) mRNA, complete cds. 11/11 None
GENEFINDER00000043437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15975546:15977384:-1 11/11 None
F36G9.5 ENSEMBL cdna:known chromosome:CEL140:V:15975546:15977519:-1 gene:F36G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15975545-15977519(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol sru-22
Ensembl F36G9.5
Entrez Gene 185368 Entrez gene
SwissProt O45474 EMBL-EBI
WormBase CE15982 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04335 Hypothetical protein F36G9.5 [Caenorhabditis elegans] ref|NP_507005.1| Serpentine Receptor, class U family member (sru-22) [Caenorhabditis elegans] 1.0E-172
blast CAB04335 Hypothetical protein F36G9.5 [Caenorhabditis elegans] ref|NP_507005.1| Serpentine Receptor, class U family member (sru-22) [Caenorhabditis elegans] 1.0E-145
blast CAB04336 Hypothetical protein F36G9.6 [Caenorhabditis elegans] ref|NP_507004.2| Serpentine Receptor, class U family member (sru-23) [Caenorhabditis elegans] 1.0E-139
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 1.0E-126
blast CAB04336 Hypothetical protein F36G9.6 [Caenorhabditis elegans] ref|NP_507004.2| Serpentine Receptor, class U family member (sru-23) [Caenorhabditis elegans] 1.0E-116
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.7E-76
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.7E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507005.1 6 27-49,69-91,111-133,154-173,205-227,250-272
F36G9.5 6 27-49,69-91,111-133,154-173,205-227,250-272
GENEFINDER00000043437 5 24-46,66-88,109-128,160-182,205-227
Sequence
Target Sequence 
>C. ELEGANS:188746_AT
gttttcccatcgagttatcagaagataaatacaaaaattatcaagtgtttaccaatagta
tttatatatccgattctctgcatagctatcatgtttccgggcaatgggttctgtagtcat
gttgcatatcctatttatggttcaattatgttgagagttacggatacaatgtttgggtgg
acaaataactatatattaatgttcaatacgttcctctgggtttccatctgtctcggcatc
aatgcggtattgatagtgaaacttatcaaattcaaactctcggtgccttctacaatgaga
tcacaattgtcacaaaaaggtgagatctcattgacattgacaactacgtcaatggctttg
gcgtatctcactaatggattgcatactattttcggcagaatatacgtagacctgaccctg
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCCCATCGAGTTATCAGAAGA 212 449 436 Antisense
TATATCCGATTCTCTGCATAGCTAT 615 661 500 Antisense
ATGTTTCCGGGCAATGGGTTCTGTA 331 47 526 Antisense
GGGTTCTGTAGTCATGTTGCATATC 170 497 541 Antisense
TTCAATACGTTCCTCTGGGTTTCCA 684 683 637 Antisense
CCATCTGTCTCGGCATCAATGCGGT 87 271 659 Antisense
ACTCTCGGTGCCTTCTACAATGAGA 429 99 711 Antisense
GTGAGATCTCATTGACATTGACAAC 654 483 755 Antisense
GACAACTACGTCAATGGCTTTGGCG 487 363 774 Antisense
GCTTTGGCGTATCTCACTAATGGAT 503 303 790 Antisense
GAATATACGTAGACCTGACCCTGTT 157 327 833 Antisense
Sequence Source Affymetrix Proprietary Database