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[188745_at] 7TM receptor

Description F36G9.6 /REP_DB=WormBase Gene ID /WP=CE15983 /TR=O45475 /GB=CAB04336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster 6grp_total > 39      4grp_total > 11      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 22.5
(-2.7)
P 		21.5
(-3)
A 		37.8
(1.2)
A 		44.6
(3)
A 		23
B 35
(0.3)
A 		45.3
(3)
A 		22.3
(-3)
A 		38
(1.1)
A 		23
C 39
(-1.5)
A 		39
(-1.5)
A 		20.9
(-3)
A 		94
(3)
P 		73
avr 32.2
(-2) 		35.3
(-1.4) 		27
(-3) 		58.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 19.9
(-0.9)
A 		15.1
(-1.6)
A 		16.9
(-1.3)
A 		6
(-3)
A 		42.1
(2.6)
P 		44.9
(3)
P 		39
B 16.3
(-1.7)
A 		32.7
(2.4)
A 		26.6
(0.8)
A 		35.3
(3)
A 		23.5
(0.1)
A 		11.2
(-3)
A 		24
C 40.9
(2.3)
A 		44.4
(3)
P 		12.3
(-3)
A 		32.4
(0.8)
A 		20
(-1.6)
A 		23.3
(-0.9)
A 		32
avr 25.7
(0.5) 		30.7
(3) 		18.6
(-3) 		24.6
(-0) 		28.5
(1.9) 		26.5
(0.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.2
(1)
P 		4.7
(-3)
A 		9.9
(3)
A 		6.5
(-0.9)
A 		5
B 11.2
(3)
A 		11.2
(3)
A 		5.2
(-3)
A 		8.1
(-0.1)
A 		6
C 12.9
(1)
A 		11.2
(-0.2)
A 		7.3
(-3)
A 		15.8
(3)
P 		9
avr 10.8
(3) 		9
(-0.3) 		7.5
(-3) 		10.1
(1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.7
(-1.8)
A 		5.4
(-0.9)
A 		3.7
(-1.8)
A 		1.5
(-3)
A 		12.7
(3)
P 		10.9
(2)
P 		11
B 5.7
(-1.7)
A 		10.9
(3)
A 		6.5
(-0.9)
A 		9.4
(1.7)
A 		9.6
(1.8)
A 		4.2
(-3)
A 		7
C 15.2
(3)
A 		13.5
(2.2)
P 		3.1
(-3)
A 		6.5
(-1.3)
A 		6.5
(-1.3)
A 		7.8
(-0.7)
A 		12
avr 8.2
(1.1) 		9.9
(3) 		4.4
(-3) 		5.8
(-1.5) 		9.6
(2.7) 		7.6
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14232
Sequence Type Exemplar sequence
Representative Public ID F36G9.6 NCBI
Target Description F36G9.6 /REP_DB=WormBase Gene ID /WP=CE15983 /TR=O45475 /GB=CAB04336.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=7TM receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074603 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-23) (sru-23) mRNA, complete cds. 11/11 None
GENEFINDER00000043436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15973016:15973991:-1 10/11 None
F36G9.6 ENSEMBL cdna:known chromosome:CEL140:V:15973016:15975162:-1 gene:F36G9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043426 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15973015-15975162(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor
Gene Symbol sru-23
Ensembl F36G9.6
Entrez Gene 185369 Entrez gene
SwissProt O45475 EMBL-EBI
WormBase CE34551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04336 Hypothetical protein F36G9.6 [Caenorhabditis elegans] ref|NP_507004.2| Serpentine Receptor, class U family member (sru-23) [Caenorhabditis elegans] 1.0E-169
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 1.0E-141
blast CAB04335 Hypothetical protein F36G9.5 [Caenorhabditis elegans] ref|NP_507005.1| Serpentine Receptor, class U family member (sru-22) [Caenorhabditis elegans] 1.0E-137
blast CAB04336 Hypothetical protein F36G9.6 [Caenorhabditis elegans] ref|NP_507004.2| Serpentine Receptor, class U family member (sru-23) [Caenorhabditis elegans] 1.0E-104
blast CAB05675 Hypothetical protein C08F11.4 [Caenorhabditis elegans] ref|NP_502630.2| Serpentine Receptor, class U family member (sru-21) [Caenorhabditis elegans] 8.0E-84
blast CAB04335 Hypothetical protein F36G9.5 [Caenorhabditis elegans] ref|NP_507005.1| Serpentine Receptor, class U family member (sru-22) [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.2E-62
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.6E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507004.2 7 23-45,65-87,107-129,150-169,179-201,208-226,260-282
F36G9.6 7 23-45,65-87,107-129,150-169,179-201,208-226,260-282
GENEFINDER00000043436 4 28-47,57-79,86-104,138-160
Sequence
Target Sequence 
>C. ELEGANS:188745_AT
gaactacgttacaatgctttttccatgtttggtggctctgctcagactaaatttgatcat
ttttccttcggattttcagaagataaacataaaaattctccgctggttgccattaatttt
cctatatccgattctcttcacagttataatgttcccgggtgatggatactgtagtcatat
tgcatatcctatttttgggtcaattttgttaagagccacaggtacaatattcgggtggac
aaataattttctagtgatgttcaacacattcttctggttttccatctgttttggcttcaa
ttcagtattgatagtgaaactcatcaaattcaagctctcagtgcctccttcaatgagatc
tcaagcttcacatagagctgaaatttcattaacactgacaactgcttcgatgtctttgtc
ttatctcactaacggattgatcactgttgttggtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTACGTTACAATGCTTTTTCCA 692 347 321 Antisense
GATCATTTTTCCTTCGGATTTTCAG 667 417 375 Antisense
ATAAAAATTCTCCGCTGGTTGCCAT 585 19 409 Antisense
GGTTGCCATTAATTTTCCTATATCC 269 507 425 Antisense
CTATATCCGATTCTCTTCACAGTTA 47 225 442 Antisense
AGAGCCACAGGTACAATATTCGGGT 710 69 532 Antisense
TCAGTGCCTCCTTCAATGAGATCTC 371 623 658 Antisense
CATTAACACTGACAACTGCTTCGAT 688 213 707 Antisense
AACTGCTTCGATGTCTTTGTCTTAT 75 143 720 Antisense
GTCTTTGTCTTATCTCACTAACGGA 296 469 732 Antisense
GGATTGATCACTGTTGTTGGTCGAA 295 509 754 Antisense
Sequence Source Affymetrix Proprietary Database