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[188744_s_at]

Description C32D5.8 /REP_DB=WormBase Gene ID /WP=CE01848 /TR=Q09489 /GB=AAC46796.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Thioredoxin
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 45      6grp_total > 72      4grp_total > 41      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 815
1 2 3 4 range
A 1792.4
(-3)
P 		2484.5
(3)
P 		2264.7
(1.1)
P 		2204.4
(0.6)
P 		692
B 2013.2
(-3)
P 		2317.3
(0.1)
P 		2607.5
(3)
P 		2114.5
(-2)
P 		594
C 2110.9
(-2.9)
P 		2439.2
(3)
P 		2107.3
(-3)
P 		2288.1
(0.3)
P 		332
avr 1972.2
(-3) 		2413.7
(3) 		2326.5
(1.8) 		2202.3
(0.1) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1745
1 2 3 4 5 6 range
A 1592.7
(-3)
P 		2548.2
(0.3)
P 		3337.2
(3)
P 		3070.1
(2.1)
P 		2198.4
(-0.9)
P 		1618.8
(-2.9)
P 		1745
B 2111.5
(-2)
P 		2006.1
(-3)
P 		2268.1
(-0.5)
P 		2343.6
(0.2)
P 		2629.2
(3)
P 		2031.7
(-2.8)
P 		623
C 2549.3
(0.4)
P 		1884
(-2.9)
P 		2708.8
(1.2)
P 		2893.6
(2.1)
P 		3086.1
(3)
P 		1858.8
(-3)
P 		1227
avr 2084.5
(-1.4) 		2146.1
(-1) 		2771.4
(3) 		2769.1
(3) 		2637.9
(2.1) 		1836.4
(-3) 		935
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 652.6
(3)
P 		539.3
(0.9)
P 		592
(1.9)
P 		322.7
(-3)
P 		330
B 642
(3)
P 		572.3
(0.8)
P 		604.2
(1.8)
P 		450.6
(-3)
P 		191
C 698.8
(2.4)
P 		701.3
(2.4)
P 		734.4
(3)
P 		385.8
(-3)
P 		349
avr 664.5
(3) 		604.3
(1.7) 		643.5
(2.5) 		386.4
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 775
1 2 3 4 5 6 range
A 293.6
(-3)
P 		906.3
(3)
P 		726.8
(1.2)
P 		778.6
(1.7)
P 		663.4
(0.6)
P 		394.1
(-2)
P 		613
B 734.7
(-0.9)
P 		667.7
(-1.6)
P 		550.8
(-3)
P 		620.7
(-2.2)
P 		1068.2
(3)
P 		757.6
(-0.6)
P 		517
C 944.9
(2.2)
P 		574.9
(-3)
P 		689.4
(-1.4)
P 		581.9
(-2.9)
P 		998.6
(3)
P 		622.3
(-2.3)
P 		424
avr 657.7
(-1.8) 		716.3
(-0.6) 		655.7
(-1.8) 		660.4
(-1.7) 		910.1
(3) 		591.3
(-3) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188744_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4693
Sequence Type Exemplar sequence
Representative Public ID C32D5.8 NCBI
Target Description C32D5.8 /REP_DB=WormBase Gene ID /WP=CE01848 /TR=Q09489 /GB=AAC46796.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Thioredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026832(11), NM_001026833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026832 NCBI Caenorhabditis elegans C32D5.8a (Thioredoxin) mRNA, complete cds. 11/11 None
NM_001026833 NCBI Caenorhabditis elegans C32D5.8b (Thioredoxin) mRNA, complete cds. 11/11 None
SNAP00000026830 ENSEMBL cdna:SNAP chromosome:CEL140:II:6343177:6343644:-1 11/11 None
GENEFINDER00000026840 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6343177:6343644:-1 11/11 None
C32D5.8a.1 ENSEMBL cdna:known chromosome:CEL140:II:6343005:6343653:-1 gene:C32D5.8 11/11 None
C32D5.8a.2 ENSEMBL cdna:known chromosome:CEL140:II:6343005:6345872:-1 gene:C32D5.8 11/11 None
C32D5.8b ENSEMBL cdna:known chromosome:CEL140:II:6343177:6345858:-1 gene:C32D5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6343173-6343641(-) 100.0 100.0
Public Domain and Genome References
Ensembl C32D5.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU20849 Hypothetical protein C32D5.8b [Caenorhabditis elegans] ref|NP_001022004.1| C32D5.8b [Caenorhabditis elegans] 3.0E-78
blast AAU20849 Hypothetical protein C32D5.8b [Caenorhabditis elegans] ref|NP_001022004.1| C32D5.8b [Caenorhabditis elegans] 1.0E-62
blast AAC46796 Hypothetical protein C32D5.8a [Caenorhabditis elegans] ref|NP_001022003.1| C32D5.8a [Caenorhabditis elegans] 1.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.2
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.037
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.2
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 0.037
Sequence
Target Sequence 
>C. ELEGANS:188744_S_AT
acgcgacaaaacgttggtcgacgcaactgaagctctagctggaaaggccgtcggattcta
cttctcggctcattggtgcccaccgtgccgcggcttcacaccaattctcaaggatttcta
tgaggaggttgaagatgagttcgaggtcgtcttcgtctctttcgatcgtagcgagagtga
tctgaaaatgtatatgagcgagcacggtgattggtaccatatcccatatggaaatgatgc
catcaaggaactttccaccaagtacggagtttccggaatcccagctctcatcatcgtcaa
gccagacggtactgaagtaacaaaggatggacgtaacgatgtgcaaaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCGACAAAACGTTGGTCGACGCA 291 87 45 Antisense
GAAGCTCTAGCTGGAAAGGCCGTCG 514 341 73 Antisense
CTGGAAAGGCCGTCGGATTCTACTT 530 241 83 Antisense
CGGCTTCACACCAATTCTCAAGGAT 227 243 135 Antisense
CAAGGATTTCTATGAGGAGGTTGAA 627 181 153 Antisense
AGATGAGTTCGAGGTCGTCTTCGTC 329 65 177 Antisense
GAAAATGTATATGAGCGAGCACGGT 168 353 228 Antisense
GAGCGAGCACGGTGATTGGTACCAT 137 385 240 Antisense
GGTGATTGGTACCATATCCCATATG 260 501 250 Antisense
ATCCCATATGGAAATGATGCCATCA 111 39 265 Antisense
TGGACGTAACGATGTGCAAAATGGA 136 545 372 Antisense
Sequence Source Affymetrix Proprietary Database