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[188741_at] lim domains

Description C26C6.6 /REP_DB=WormBase Gene ID /WP=CE05315 /TR=Q18208 /GB=CAA96598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lim domains
Cluster 6grp_total > 88      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 16.2
(-3)
A 		19.8
(-2.5)
A 		25.8
(-1.7)
A 		62.1
(3)
A 		46
B 3
(-3)
A 		44.5
(3)
A 		34.8
(1.6)
A 		34.6
(1.6)
A 		42
C 29.4
(-0.6)
P 		19.8
(-3)
A 		22
(-2.4)
P 		43.5
(3)
A 		24
avr 16.2
(-3) 		28
(-0.7) 		27.5
(-0.8) 		46.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 3.1
(-3)
A 		3.8
(-2.9)
A 		33.4
(-0.7)
A 		18.3
(-1.9)
A 		42.6
(-0.1)
A 		83.7
(3)
P 		81
B 14.6
(-1.3)
A 		33.1
(1.6)
M 		19
(-0.6)
A 		3.4
(-3)
A 		39.7
(2.6)
P 		42.1
(3)
P 		39
C 12.7
(-2.2)
A 		28.8
(-0.8)
A 		4.4
(-3)
A 		8.4
(-2.6)
A 		39
(0.2)
P 		70
(3)
P 		66
avr 10.1
(-3) 		21.9
(-1.7) 		18.9
(-2) 		10
(-3) 		40.4
(0.3) 		65.3
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.9
(-1)
A 		4.3
(-3)
A 		6.7
(0)
A 		9.1
(3)
A 		5
B 1
(-3)
A 		11
(3)
A 		8.1
(1.3)
A 		7.4
(0.8)
A 		10
C 9.7
(3)
P 		5.7
(-3)
A 		7.7
(0)
P 		7.3
(-0.6)
A 		4
avr 5.5
(-3) 		7
(0.7) 		7.5
(2) 		7.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.3
(-2.8)
A 		7.3
(-1)
A 		4.6
(-1.8)
A 		12.9
(0.7)
A 		20.4
(3)
P 		20
B 5.1
(-1.3)
A 		11
(1)
M 		4.6
(-1.5)
A 		0.9
(-3)
A 		16.1
(3)
P 		15.7
(2.8)
P 		15
C 4.7
(-2)
A 		8.8
(-0.9)
A 		1.1
(-3)
A 		1.7
(-2.8)
A 		12.6
(0.1)
P 		23.4
(3)
P 		22
avr 3.5
(-2.6) 		7
(-1.4) 		4.3
(-2.3) 		2.4
(-3) 		13.9
(1) 		19.8
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.817
Sequence Type Exemplar sequence
Representative Public ID C26C6.6 NCBI
Target Description C26C6.6 /REP_DB=WormBase Gene ID /WP=CE05315 /TR=Q18208 /GB=CAA96598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=lim domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059705 NCBI Caenorhabditis elegans C26C6.6 (C26C6.6) mRNA, complete cds. 11/11 None
SNAP00000003867 ENSEMBL cdna:SNAP chromosome:CEL140:I:7514100:7514774:1 11/11 None
GENEFINDER00000003876 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7514100:7520620:1 11/11 None
C26C6.6 ENSEMBL cdna:known chromosome:CEL140:I:7514100:7514774:1 gene:C26C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7514030-7514705(+) 100.0 100.0
Public Domain and Genome References
Gene Title lim domains
Ensembl C26C6.6
Entrez Gene 182934 Entrez gene
SwissProt Q18208 EMBL-EBI
WormBase CE05315 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96599 Hypothetical protein C26C6.7 [Caenorhabditis elegans] ref|NP_492107.1| C26C6.7 [Caenorhabditis elegans] 0.0
blast CAE66566 Hypothetical protein CBG11881 [Caenorhabditis briggsae] 1.0E-176
blast CAA96598 Hypothetical protein C26C6.6 [Caenorhabditis elegans] ref|NP_492106.1| C26C6.6 [Caenorhabditis elegans] 2.0E-80
blast CAA96598 Hypothetical protein C26C6.6 [Caenorhabditis elegans] ref|NP_492106.1| C26C6.6 [Caenorhabditis elegans] 6.0E-67
blast CAE66561 Hypothetical protein CBG11874 [Caenorhabditis briggsae] 2.0E-62
blast CAA15978 Hypothetical protein Y1A5A.1 [Caenorhabditis elegans] ref|NP_497801.1| Y1A5A.1 [Caenorhabditis elegans] 5.0E-11
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 8.5
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-5
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 5.4E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.1E-12
Pfam IPR000971 EMBL-EBI Globin 5.1E-21
Sequence
Target Sequence 
>C. ELEGANS:188741_AT
ggatgtaaagccaaaatcgccgaggaggatgtcgaaaagaacaaagttgtcttctttctg
aatcgaatgtggcatcgggatcatattcaatgcattttttgtaaacttcaaatctcggac
aatcgttatttccgttcatcaattgatccaatgaaaccatcatgttatgcatgtcatatt
caaacaaatcatccatcttgcacaggatgctcattgccagtaattgaacgaggacttgtt
gcatttaatcgtctctttcatattgattgtttccgttgtgcaatctgtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTAAAGCCAAAATCGCCGAGG 17 515 40 Antisense
AAGTTGTCTTCTTTCTGAATCGAAT 488 155 83 Antisense
ATGTGGCATCGGGATCATATTCAAT 544 49 106 Antisense
GTAAACTTCAAATCTCGGACAATCG 410 459 140 Antisense
GACAATCGTTATTTCCGTTCATCAA 693 363 157 Antisense
AAACAAATCATCCATCTTGCACAGG 593 127 221 Antisense
CTTGCACAGGATGCTCATTGCCAGT 153 217 236 Antisense
AATTGAACGAGGACTTGTTGCATTT 187 179 261 Antisense
GTTGCATTTAATCGTCTCTTTCATA 163 439 277 Antisense
GTCTCTTTCATATTGATTGTTTCCG 202 471 290 Antisense
TTGTTTCCGTTGTGCAATCTGTAAC 618 699 306 Antisense
Sequence Source Affymetrix Proprietary Database