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[188738_s_at]

Description Y7A5A.4 /REP_DB=WormBase Gene ID /WP=CE21329 /TR=Q9U1R6 /GB=CAA22463.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Transposase
Cluster 6grp_total > 61      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 7.5
(-3)
A 		41.7
(3)
A 		8.9
(-2.8)
A 		39.6
(2.6)
A 		34
B 1.1
(-3)
A 		28.7
(3)
A 		0.9
(-3)
A 		17.9
(0.7)
A 		28
C 6.7
(-3)
A 		17
(-0.9)
A 		8.6
(-2.6)
A 		36.4
(3)
A 		30
avr 5.1
(-3) 		29.1
(2.5) 		6.1
(-2.8) 		31.3
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 0.8
(-3)
A 		16.5
(3)
A 		14.6
(2.3)
A 		15.8
(2.7)
A 		10.8
(0.8)
A 		2.5
(-2.4)
A 		16
B 7.9
(-1.8)
A 		9
(-1.6)
A 		31
(3)
A 		9.1
(-1.5)
A 		2.1
(-3)
A 		10.6
(-1.2)
A 		29
C 10.1
(-0.6)
A 		4.3
(-2.1)
A 		1.9
(-2.7)
A 		23.7
(3)
A 		16.9
(1.2)
A 		0.8
(-3)
A 		23
avr 6.3
(-2.1) 		9.9
(-0.3) 		15.8
(2.8) 		16.2
(3) 		9.9
(-0.3) 		4.6
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.7
(-2.6)
A 		9
(3)
A 		2.3
(-3)
A 		5.8
(0.1)
A 		7
B 0.4
(-2.8)
A 		7.1
(3)
A 		0.2
(-3)
A 		3.8
(0.1)
A 		7
C 2.2
(-3)
A 		4.9
(1.2)
A 		3
(-1.8)
A 		6.1
(3)
A 		4
avr 1.8
(-3) 		7
(3) 		1.8
(-3) 		5.2
(0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.1
(-3)
A 		5.9
(3)
A 		3.2
(0.2)
A 		4
(1)
A 		3.2
(0.2)
A 		0.6
(-2.5)
A 		6
B 2.8
(-1.3)
A 		3
(-1.1)
A 		7.5
(3)
A 		2.4
(-1.6)
A 		0.9
(-3)
A 		4
(-0.2)
A 		7
C 3.7
(0.9)
A 		1.3
(-1.8)
A 		0.5
(-2.8)
A 		4.8
(2.2)
A 		5.5
(3)
A 		0.3
(-3)
A 		5
avr 2.2
(-1.3) 		3.4
(2.1) 		3.7
(3) 		3.7
(3) 		3.2
(1.6) 		1.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188738_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17449
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.4 NCBI
Target Description Y7A5A.4 /REP_DB=WormBase Gene ID /WP=CE21329 /TR=Q9U1R6 /GB=CAA22463.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078196 NCBI Caenorhabditis elegans Y7A5A.3 (Y7A5A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000028092 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15781194:15783627:-1 11/11 None
Y7A5A.4 ENSEMBL cdna:known chromosome:CEL140:X:15781543:15783627:-1 gene:Y7A5A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.4
Entrez Gene 189382 Entrez gene
SwissProt Q9XVZ0 EMBL-EBI
WormBase CE38664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27435 hypothetical protein Y7A5A.4 - Caenorhabditis elegans 0.0
blast T27281 hypothetical protein Y64G10A.d - Caenorhabditis elegans 0.0
blast AAF60591 Hypothetical protein Y45G12C.13 [Caenorhabditis elegans] 0.0
blast CAA22464 Hypothetical protein Y7A5A.3 [Caenorhabditis elegans] ref|NP_510597.2| Y7A5A.3 [Caenorhabditis elegans] 1.0E-157
blast T27435 hypothetical protein Y7A5A.4 - Caenorhabditis elegans 1.0E-83
blast T27436 hypothetical protein Y7A5A.3 - Caenorhabditis elegans 4.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 9.6E-40
Sequence
Target Sequence 
>C. ELEGANS:188738_S_AT
agactaacattttcacttcccaatattttggttatgtccccgttacgttatctctccatg
ctacaagttgcacaaaccaaatcaaaactgacaagatcacggatattccgaaacagcatt
cgaataagaacggagcttgtgttcaagtgcacacaaacatgtaccctatcaaagtggcta
caggaatgaaaatgtatgtttaccacgtaactgtgaagaacgtttggaaaactcctggag
aatgtcaacgatgcagagttgtatacagtggcacgagacgcttcaaattgaaaggtcatt
cttctacaattgtcgagcaaggttcttcagcttcactttacttcagaggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTAACATTTTCACTTCCCAATA 477 69 1031 Antisense
GTTATCTCTCCATGCTACAAGTTGC 233 447 1077 Antisense
ACTGACAAGATCACGGATATTCCGA 582 97 1117 Antisense
ACGGAGCTTGTGTTCAAGTGCACAC 127 97 1160 Antisense
AGTGCACACAAACATGTACCCTATC 533 59 1176 Antisense
AACTCCTGGAGAATGTCAACGATGC 650 141 1260 Antisense
GCAGAGTTGTATACAGTGGCACGAG 601 311 1283 Antisense
GTGGCACGAGACGCTTCAAATTGAA 389 491 1298 Antisense
AGGTCATTCTTCTACAATTGTCGAG 652 57 1323 Antisense
GTCGAGCAAGGTTCTTCAGCTTCAC 628 473 1342 Antisense
TCAGCTTCACTTTACTTCAGAGGCA 95 625 1357 Antisense
Sequence Source Affymetrix Proprietary Database