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[188735_at] helicase

Description Y116F11A.1 /REP_DB=WormBase Gene ID /WP=CE24155 /TR=Q9U3T4 /GB=CAB60760.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=helicase
Cluster 6grp_total > 87      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 27.7
(-0.2)
A 		22.1
(-0.9)
A 		5.1
(-3)
A 		53.8
(3)
A 		49
B 19
(1.9)
A 		3.6
(-3)
A 		12.3
(-0.3)
A 		22.6
(3)
A 		19
C 3
(-3)
A 		16.9
(-1.8)
A 		7.3
(-2.6)
A 		72.1
(3)
A 		69
avr 16.6
(-1.8) 		14.2
(-2.1) 		8.2
(-3) 		49.5
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.5)
A 		2.3
(-3)
A 		3.6
(-1.4)
A 		6.7
(2.5)
A 		3.5
(-1.5)
A 		7.1
(3)
A 		5
B 2.6
(-2.4)
A 		1.6
(-2.8)
A 		7.7
(-0.4)
A 		1.2
(-3)
A 		12.1
(1.4)
A 		16.2
(3)
A 		15
C 2.2
(-2.6)
A 		5.2
(-1.1)
A 		1.3
(-3)
A 		8.1
(0.4)
A 		6.2
(-0.6)
A 		13.4
(3)
A 		12
avr 2.5
(-3) 		3
(-2.7) 		4.2
(-1.9) 		5.3
(-1.3) 		7.3
(-0) 		12.2
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10.1
(3)
A 		4.8
(-0.6)
A 		1.3
(-3)
A 		7.9
(1.5)
A 		9
B 6.1
(3)
A 		0.9
(-3)
A 		2.8
(-0.8)
A 		4.8
(1.5)
A 		5
C 1
(-3)
A 		4.8
(-1)
A 		2.5
(-2.2)
A 		12.2
(3)
A 		11
avr 5.7
(0.4) 		3.5
(-1.7) 		2.2
(-3) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-1.5)
A 		0.8
(-1.5)
A 		1.7
(3)
A 		1
(-0.5)
A 		1.7
(3)
A 		1
B 0.9
(-2.4)
A 		0.5
(-2.8)
A 		1.9
(-1.3)
A 		0.3
(-3)
A 		4.9
(1.8)
A 		6
(3)
A 		6
C 0.8
(-2.3)
A 		1.6
(-1.1)
A 		0.3
(-3)
A 		1.6
(-1.1)
A 		2
(-0.6)
A 		4.5
(3)
A 		4
avr 0.7
(-3) 		1
(-2.5) 		1
(-2.5) 		1.2
(-2.1) 		2.6
(0.4) 		4.1
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13119
Sequence Type Exemplar sequence
Representative Public ID Y116F11A.1 NCBI
Target Description Y116F11A.1 /REP_DB=WormBase Gene ID /WP=CE24155 /TR=Q9U3T4 /GB=CAB60760.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=helicase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075419(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075419 NCBI Caenorhabditis elegans Y116F11A.1 (helicase) mRNA, complete cds. 11/11 A 
SNAP00000017813 ENSEMBL cdna:SNAP chromosome:CEL140:V:19728793:19729997:1 11/11 None
GENEFINDER00000017817 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19727036:19733073:1 10/11 None
Y116F11A.1 ENSEMBL cdna:known chromosome:CEL140:V:19728586:19730163:1 gene:Y116F11A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19728792-19729997(+) 100.0 100.0
Public Domain and Genome References
Gene Title helicase
Ensembl Y116F11A.1
Entrez Gene 180297 Entrez gene
SwissProt Q9U3T4 EMBL-EBI
WormBase CE24155 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 1.0E-98
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 7.0E-87
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 3.0E-70
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 2.0E-69
blast CAB60761 Hypothetical protein Y116F11A.3 [Caenorhabditis elegans] ref|NP_507819.1| Y116F11A.3 [Caenorhabditis elegans] 4.0E-48
blast XP_805012 PIF1 helicase-like protein, putative [Trypanosoma cruzi] gb|EAN83161.1| PIF1 helicase-like protein, putative [Trypanosoma cruzi] 1.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017817 1 160-182
Sequence
Target Sequence 
>C. ELEGANS:188735_AT
ggctaacgacgaacaacagcaacttctgaacaagatcgttcgggatgattcgcaagacaa
acaagtattgttaatgataaatggtgcagctgggacagggaaaacatttttgatcaagct
aatagaaaactcaatgaacagaagcgtaagaaaaagagtagttttgatgactggatctac
cgggaaagcagcaaaagcgatcggagggcgcacactgcattgcacaattggcctaccgaa
cgaaaaacctgaagatctggaaagattgaaatatcaggcattcatctgcgtcacgacacg
actcattatcatcgatgaaatcacactcctagcgagctggcacctggatgcgacggacat
ggttctcaagagaacgccgaagaggacggatgcgctcttcggcgggctatcgatcatcct
cgtgggggatcttcgacagctgaacttgggaggatggcgtggaaagaagcagatcgacac
agtcttcataaaagttggtggataccccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTAACGACGAACAACAGCAACTT 293 537 15 Antisense
CAACTTCTGAACAAGATCGTTCGGG 83 185 34 Antisense
GATCGTTCGGGATGATTCGCAAGAC 195 417 48 Antisense
GGGATGATTCGCAAGACAAACAAGT 51 497 56 Antisense
TATCAGGCATTCATCTGCGTCACGA 590 657 286 Antisense
TGCGTCACGACACGACTCATTATCA 126 583 301 Antisense
TTCTCAAGAGAACGCCGAAGAGGAC 75 607 377 Antisense
CAGCTGAACTTGGGAGGATGGCGTG 328 203 451 Antisense
GAGGATGGCGTGGAAAGAAGCAGAT 46 405 464 Antisense
GAAGCAGATCGACACAGTCTTCATA 301 341 480 Antisense
TCATAAAAGTTGGTGGATACCCCGA 553 599 500 Antisense
Sequence Source Affymetrix Proprietary Database