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[188734_at] esterase

Description ZK945.1 /REP_DB=WormBase Gene ID /WP=CE01731 /TR=SW:Q09621 /GB=CAA88435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 89      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 95      6grp_total > 95      4grp_total > 09      6grp_high1_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4895
1 2 3 4 range
A 462.5
(-3)
P 		763.4
(-2.6)
P 		1034.7
(-2.3)
P 		5244.8
(3)
P 		4782
B 349.6
(-3)
P 		774.6
(-2.4)
P 		683.8
(-2.5)
P 		4478
(3)
P 		4128
C 450.6
(-3)
P 		832.6
(-2.5)
P 		972.9
(-2.3)
P 		5092.8
(3)
P 		4642
avr 420.9
(-3) 		790.2
(-2.5) 		897.1
(-2.4) 		4938.5
(3) 		4518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 522.2
(-1.9)
P 		650.6
(-0.4)
P 		433.4
(-3)
P 		729.9
(0.5)
P 		778.2
(1.1)
P 		940.3
(3)
P 		507
B 770.4
(1.2)
P 		774.1
(1.3)
P 		302.8
(-3)
P 		819.6
(1.7)
P 		942.8
(2.8)
P 		968.1
(3)
P 		665
C 727.7
(0.6)
P 		528.3
(-1.8)
P 		424.7
(-3)
P 		624.5
(-0.6)
P 		923.8
(3)
P 		879.5
(2.5)
P 		499
avr 673.4
(0.2) 		651
(-0.1) 		387
(-3) 		724.7
(0.7) 		881.6
(2.5) 		929.3
(3) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 168.4
(-3)
P 		165.7
(-3)
P 		270.5
(-2)
P 		767.7
(3)
P 		602
B 111.5
(-3)
P 		191.3
(-2.4)
P 		158.5
(-2.7)
P 		954.3
(3)
P 		843
C 149.2
(-3)
P 		239.4
(-2.2)
P 		339.1
(-1.4)
P 		858.7
(3)
P 		710
avr 143
(-3) 		198.8
(-2.5) 		256
(-2.1) 		860.2
(3) 		717

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 96.3
(-2.9)
P 		231.4
(2.9)
P 		94.4
(-3)
P 		185.1
(0.9)
P 		234.8
(3)
P 		228.9
(2.7)
P 		140
B 268.1
(0.8)
P 		257.7
(0.6)
P 		73.5
(-3)
P 		217.1
(-0.2)
P 		383
(3)
P 		361
(2.6)
P 		310
C 269.7
(2.1)
P 		161.2
(-1.3)
P 		108.1
(-3)
P 		125.6
(-2.4)
P 		298.9
(3)
P 		294.4
(2.9)
P 		191
avr 211.4
(0.4) 		216.8
(0.5) 		92
(-3) 		175.9
(-0.6) 		305.6
(3) 		294.8
(2.7) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3414
Sequence Type Exemplar sequence
Representative Public ID ZK945.1 NCBI
Target Description ZK945.1 /REP_DB=WormBase Gene ID /WP=CE01731 /TR=SW:Q09621 /GB=CAA88435.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063775 NCBI Caenorhabditis elegans ZK945.1 (esterase) mRNA, complete cds. 11/11 None
SNAP00000015332 ENSEMBL cdna:SNAP chromosome:CEL140:II:10095983:10098600:1 11/11 None
GENEFINDER00000015343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10094786:10098600:1 11/11 None
ZK945.1 ENSEMBL cdna:known chromosome:CEL140:II:10094784:10098696:1 gene:ZK945.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10094782-10098597(+) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl ZK945.1
Entrez Gene 174570 Entrez gene
SwissProt Q09621 EMBL-EBI
WormBase CE01731 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88435 Hypothetical protein ZK945.1 [Caenorhabditis elegans] ref|NP_496176.1| ZK945.1 [Caenorhabditis elegans] sp|Q09621|YS81_CAEEL Hypothetical protein ZK945.1 in chromosome II 0.0
blast CAE67822 Hypothetical protein CBG13402 [Caenorhabditis briggsae] 0.0
blast CAE57633 Hypothetical protein CBG00618 [Caenorhabditis briggsae] 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 1.2E-84
Pfam IPR001466 EMBL-EBI Beta-lactamase 1.2E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496176.1 1 26-48
ZK945.1 1 26-48
GENEFINDER00000015343 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:188734_AT
gagattgttcatgatccacgtgttctgattgtacttgcagtttttaatcttcgaccacca
aattctattgcaagaaagattgctgcaaatccaacgtggttcaagttggaacaggatgtg
aacacctttaataatccaactctacatgctatggagcaagtcgctgctcttggtattaca
aagtcaagagatttagctagacttttctcactcgtacaacaaggaaaactgttctctact
gaacttctagaaaagttccgtgccccccaagttcaggggattgatgaagttgtcatgact
cctctaccaaaaggacatggtttcctatacgagagacatccaatgggagggaaaaagtgg
cttgttggacatcctggttacggtggcagcacagtaatgatggatttggaagatgggatc
acgattgcctacgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTGTTCATGATCCACGTGTTC 369 397 859 Antisense
TCCACGTGTTCTGATTGTACTTGCA 442 587 873 Antisense
TGCAGTTTTTAATCTTCGACCACCA 164 579 894 Antisense
GCAAGTCGCTGCTCTTGGTATTACA 667 321 1014 Antisense
TAGACTTTTCTCACTCGTACAACAA 526 649 1056 Antisense
CGTGCCCCCCAAGTTCAGGGGATTG 592 239 1117 Antisense
TGAAGTTGTCATGACTCCTCTACCA 25 575 1143 Antisense
GGTTTCCTATACGAGAGACATCCAA 506 505 1177 Antisense
AAAGTGGCTTGTTGGACATCCTGGT 80 121 1212 Antisense
GGACATCCTGGTTACGGTGGCAGCA 59 527 1225 Antisense
GATGGGATCACGATTGCCTACGTCT 131 409 1270 Antisense
Sequence Source Affymetrix Proprietary Database