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[188731_s_at]

Description F52D2.3 /REP_DB=WormBase Gene ID /WP=CE04624 /GB=AAC78154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposition protein
Cluster 6grp_total > 90      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 35.1
(-1.4)
A 		10
(-3)
A 		42.2
(-0.9)
A 		102.4
(3)
M 		92
B 36.8
(-3)
A 		90.4
(3)
A 		48.6
(-1.7)
A 		77.6
(1.6)
M 		54
C 47.9
(-1.6)
A 		22.4
(-3)
A 		26.2
(-2.8)
A 		131.2
(3)
A 		109
avr 39.9
(-2.9) 		40.9
(-2.8) 		39
(-3) 		103.7
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 67
(2.5)
A 		45.8
(0.2)
A 		54.6
(1.1)
A 		71.6
(3)
A 		24.7
(-2.1)
A 		16.8
(-3)
A 		55
B 27
(-1.6)
A 		41.8
(0.3)
A 		31.9
(-1)
A 		16.4
(-3)
A 		63.2
(3)
A 		29.5
(-1.3)
A 		47
C 31.8
(-1.3)
A 		77.3
(1.5)
A 		4.7
(-3)
A 		100.5
(3)
A 		28.9
(-1.5)
A 		39.6
(-0.8)
A 		96
avr 41.9
(-0.7) 		55
(1.6) 		30.4
(-2.7) 		62.8
(3) 		38.9
(-1.2) 		28.6
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.8
(2)
A 		2.2
(-3)
A 		11
(1.1)
A 		15
(3)
M 		13
B 11.7
(-2.8)
A 		22.3
(3)
A 		11.3
(-3)
A 		16.5
(-0.2)
M 		11
C 15.9
(0.6)
A 		6.4
(-3)
A 		9.1
(-2)
A 		22.1
(3)
A 		16
avr 13.5
(-0.5) 		10.3
(-3) 		10.5
(-2.8) 		17.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12.3
(0.5)
A 		16.3
(2.2)
A 		11.9
(0.3)
A 		18.2
(3)
A 		7.4
(-1.6)
A 		4.1
(-3)
A 		14
B 9.4
(-1.6)
A 		13.9
(-0.3)
A 		7.8
(-2)
A 		4.3
(-3)
A 		25.7
(3)
A 		11
(-1.1)
A 		21
C 11.8
(-0.2)
A 		23.6
(3)
A 		1.2
(-3)
A 		20.2
(2.1)
A 		9.3
(-0.8)
A 		13.3
(0.2)
A 		22
avr 11.2
(-0.7) 		17.9
(3) 		7
(-3) 		14.2
(1) 		14.1
(0.9) 		9.5
(-1.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188731_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18204
Sequence Type Exemplar sequence
Representative Public ID F52D2.3 NCBI
Target Description F52D2.3 /REP_DB=WormBase Gene ID /WP=CE04624 /GB=AAC78154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=transposition protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016869 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1954413:1962065:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026030 2/11 Cross Hyb Matching Probes None
SNAP00000001100 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001105 1/11 Cross Hyb Matching Probes None
SNAP00000005809 2/11 Cross Hyb Matching Probes None
SNAP00000029607 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029610 1/11 Cross Hyb Matching Probes None
SNAP00000016854 7/11 Cross Hyb Matching Probes None
SNAP00000009495 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009497 7/11 Cross Hyb Matching Probes None
D1081.1 1/11 Cross Hyb Matching Probes None
F49F1.13 1/11 Cross Hyb Matching Probes None
M03D4.5 1/11 Cross Hyb Matching Probes None
C17H12.7 1/11 Cross Hyb Matching Probes None
R13H7.3 1/11 Cross Hyb Matching Probes None
C52D10.4 1/11 Cross Hyb Matching Probes None
T27C4.5 1/11 Cross Hyb Matching Probes None
C18C4.4 1/11 Cross Hyb Matching Probes None
R04B5.2 1/11 Cross Hyb Matching Probes None
F14H8.3 1/11 Cross Hyb Matching Probes None
Y113G7A.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60509 Hypothetical protein Y39A3A.1 [Caenorhabditis elegans] 4.0E-91
blast AAB70370 Hypothetical protein F39E9.5 [Caenorhabditis elegans] ref|NP_494502.1| F39E9.5 [Caenorhabditis elegans] 9.0E-48
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 1.0E-38
Sequence
Target Sequence 
>C. ELEGANS:188731_S_AT
gggtattgtatgttagccataccaggaataaagagtgggtcccggtcgaggaaaccgcga
caaaaacctgacctcaaagggaaacttcacgagaaaaagtgcttctctcaatttgacttc
gttacaatcaacgctggcctatactctattcaattggaaaagatggtccgtgctcatcga
ttgcatcaccctagaggatcaaaattgttgctgctctatgacaacgcaagatggcataca
actttgaagacccgccaaaagctccagacactcggaatcgaagttttgcctcacccaccg
tattcaccggacttggctcctactgactctcaggagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTATTGTATGTTAGCCATACCAG 15 497 490 Antisense
TCGAGGAAACCGCGACAAAAACCTG 156 1 535 Antisense
GCTTCTCTCAATTTGACTTCGTTAC 464 305 590 Antisense
GACTTCGTTACAATCAACGCTGGCC 83 371 604 Antisense
ATCAACGCTGGCCTATACTCTATTC 378 27 616 Antisense
CTGGCCTATACTCTATTCAATTGGA 104 241 623 Antisense
AAGATGGTCCGTGCTCATCGATTGC 401 153 649 Antisense
ATCGATTGCATCACCCTAGAGGATC 394 35 665 Antisense
GCTGCTCTATGACAACGCAAGATGG 256 297 699 Antisense
CGCAAGATGGCATACAACTTTGAAG 29 255 714 Antisense
GGCTCCTACTGACTCTCAGGAGTTC 624 537 804 Antisense
Sequence Source Affymetrix Proprietary Database