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[188730_s_at] Ank repeat

Description C09F9.5B /REP_DB=WormBase Gene ID /WP=CE17397 /CHR=2 /FEA=Sanger Annotation /DEF=Ank repeat (HINXTON) TR:O62057 protein_id:CAB03864.1
Cluster 6grp_high1_10_10 > 09      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_total > 29      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 207.6
(2.1)
P 		170.4
(-3)
P 		188.7
(-0.5)
P 		214.4
(3)
P 		44
B 219.3
(3)
P 		189.1
(-0.5)
P 		167.7
(-2.9)
P 		167.1
(-3)
P 		52
C 256.5
(3)
P 		212.1
(0.2)
P 		160.6
(-3)
P 		180.6
(-1.7)
P 		96
avr 227.8
(3) 		190.5
(-1) 		172.3
(-3) 		187.4
(-1.4) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 209.2
(3)
P 		141.4
(-1.7)
P 		123.4
(-3)
P 		140.8
(-1.8)
P 		180.8
(1)
P 		128.6
(-2.6)
P 		86
B 162.1
(1.2)
P 		156.2
(0.3)
P 		133.4
(-3)
A 		174.5
(3)
P 		158.4
(0.6)
P 		136.4
(-2.6)
P 		41
C 175.3
(3)
P 		162.4
(1.8)
P 		124.4
(-1.9)
P 		112.5
(-3)
P 		170.7
(2.6)
P 		120.9
(-2.2)
P 		63
avr 182.2
(3) 		153.3
(-0.1) 		127.1
(-3) 		142.6
(-1.3) 		170
(1.7) 		128.6
(-2.8) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 75.6
(3)
P 		37
(-2.2)
P 		49.3
(-0.6)
P 		31.4
(-3)
P 		44
B 69.9
(3)
P 		46.7
(-1.1)
P 		38.9
(-2.4)
P 		35.6
(-3)
P 		34
C 84.9
(3)
P 		61
(0.4)
P 		56
(-0.2)
P 		30.4
(-3)
P 		55
avr 76.8
(3) 		48.2
(-0.9) 		48.1
(-0.9) 		32.5
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 38.6
(-0.5)
P 		50.3
(2.1)
P 		26.9
(-3)
P 		35.7
(-1.1)
P 		54.6
(3)
P 		31.3
(-2)
P 		28
B 56.4
(1.5)
P 		52
(0.7)
P 		32.4
(-3)
A 		46.2
(-0.4)
P 		64.4
(3)
P 		50.9
(0.5)
P 		32
C 65
(3)
P 		49.5
(0.8)
P 		31.7
(-1.7)
P 		22.6
(-3)
P 		55.2
(1.6)
P 		40.5
(-0.5)
P 		42
avr 53.3
(2) 		50.6
(1.4) 		30.3
(-3) 		34.8
(-2) 		58.1
(3) 		40.9
(-0.7) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188730_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3427
Sequence Type Exemplar sequence
Representative Public ID C09F9.5B NCBI
Target Description C09F9.5B /REP_DB=WormBase Gene ID /WP=CE17397 /CHR=2 /FEA=Sanger Annotation /DEF=Ank repeat (HINXTON) TR:O62057 protein_id:CAB03864.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026774 NCBI Caenorhabditis elegans C09F9.3 (C09F9.3) mRNA, complete cds. 11/11 None
SNAP00000033575 ENSEMBL cdna:SNAP chromosome:CEL140:II:14714170:14718088:-1 11/11 None
SNAP00000033576 ENSEMBL cdna:SNAP chromosome:CEL140:II:14721240:14728236:-1 11/11 None
GENEFINDER00000033581 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14714170:14718088:-1 11/11 None
GENEFINDER00000033585 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14721240:14733355:-1 11/11 None
C09F9.3 ENSEMBL cdna:known chromosome:CEL140:II:14713175:14727982:-1 gene:C09F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14714166-14718085(-) 100.0 100.0
chrII:14721236-14725155(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl C09F9.3
Entrez Gene 175130 Entrez gene
SwissProt Q95ZZ0 EMBL-EBI
WormBase CE36977 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133A_2:205531_S_AT glutaminase 2 (liver, mitochondrial) hs
HG-U133A:205531_S_AT glutaminase 2 (liver, mitochondrial) hs
HG-U133_PLUS_2:205531_S_AT glutaminase 2 (liver, mitochondrial) hs
HG-FOCUS:205531_S_AT glutaminase 2 (liver, mitochondrial) hs
HU35KSUBB:RC_H08102_AT glutaminase 2 (liver, mitochondrial) hs
U133_X3P:G7019388_3P_A_AT glutaminase 2 (liver, mitochondrial) hs
U133_X3P:HS2.381364.1.S1_3P_X_AT glutaminase 2 (liver, mitochondrial) hs
U133_X3P:1564705_3P_AT glutaminase 2 (liver, mitochondrial) hs
HG-U133_PLUS_2:1564705_AT glutaminase 2 (liver, mitochondrial) hs
HG-U133_PLUS_2:1564706_S_AT glutaminase 2 (liver, mitochondrial) hs
HG-U133_PLUS_2:1564707_X_AT glutaminase 2 (liver, mitochondrial) hs
HG-U95AV2:35711_AT glutaminase 2 (liver, mitochondrial) hs
HG-U95D:71127_AT glutaminase 2 (liver, mitochondrial) hs
RAE230A:1370375_AT glutaminase 2 (liver, mitochondrial) rn
RAT230_2:1370375_AT glutaminase 2 (liver, mitochondrial) rn
RG-U34A:J05499_AT glutaminase 2 (liver, mitochondrial) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6541 glutamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4359 glutaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC42253 Hypothetical protein C09F9.3 [Caenorhabditis elegans] ref|NP_001021945.1| C09F9.3 [Caenorhabditis elegans] 0.0
blast T19131 hypothetical protein C09F9.3 - Caenorhabditis elegans 0.0
blast CAE60621 Hypothetical protein CBG04264 [Caenorhabditis briggsae] 0.0
blast T19133 hypothetical protein C09F9.5b - Caenorhabditis elegans 0.0
blast T19132 hypothetical protein C09F9.5a - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR007043 EMBL-EBI Glutaminase 1.0E-126
Pfam IPR007043 EMBL-EBI Glutaminase 8.0E-101
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR007043 EMBL-EBI Glutaminase 1.4E-102
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR007043 EMBL-EBI Glutaminase 1.0E-126
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR007043 EMBL-EBI Glutaminase 1.2E-25
Pfam IPR007043 EMBL-EBI Glutaminase 3.9E-74
Pfam IPR002110 EMBL-EBI Ankyrin 0.82
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-5
Pfam IPR007043 EMBL-EBI Glutaminase 2.0E-96
Pfam IPR007043 EMBL-EBI Glutaminase 3.9E-74
Sequence
Target Sequence 
>C. ELEGANS:188730_S_AT
gatcttctcgtttcggaacttgaacccgataactcaagcgtcgatgacggagaagccgag
agctctggagaggatgagcttggaaatggaataactggaatgttgactgacgatttggag
aaacgagagtgggcgcttcatgctaatggaaatatggaacaacaccaaacgagaccattt
ttaggcgaaatcaactaccagcttgtcagaaggaaatcatcaaaagctccaccgacgccc
gactacaagccaccgcaatttggctacggtgctcttccagttagcaagtaccagcagcag
cttcaacttcagcagcaacagcagcaaaacgaaaagaaagccagccaagacaagcatcgt
aacatcaatgggcatggacatatgaatggcaatggaactcacacaaacggcaatcatcaa
catcaccagccccaccagctcccgcaaaacattccacatcatatgctgctcaacggtgcc
gccggagggctcaatacgcggaggctcagctcgccgaacgagcaggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCTCGTTTCGGAACTTGAAC 615 417 985 Antisense
ACGAGAGTGGGCGCTTCATGCTAAT 707 89 1107 Antisense
GGCGAAATCAACTACCAGCTTGTCA 47 541 1168 Antisense
CCGCAATTTGGCTACGGTGCTCTTC 207 263 1237 Antisense
TACGGTGCTCTTCCAGTTAGCAAGT 633 645 1249 Antisense
GTTAGCAAGTACCAGCAGCAGCTTC 508 441 1264 Antisense
GAAAGCCAGCCAAGACAAGCATCGT 477 359 1320 Antisense
GGAACTCACACAAACGGCAATCATC 547 529 1378 Antisense
ACATCATATGCTGCTCAACGGTGCC 32 107 1440 Antisense
GCCGGAGGGCTCAATACGCGGAGGC 673 283 1465 Antisense
GCTCAGCTCGCCGAACGAGCAGGAC 198 301 1488 Antisense
Sequence Source Affymetrix Proprietary Database