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[188727_s_at] ankyrin motif

Description R31.2 /REP_DB=WormBase Gene ID /WP=CE21125 /TR=Q22015 /GB=CAB00128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 57      6grp_total > 74      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1417
1 2 3 4 range
A 2206.3
(0.2)
P 		2813.1
(3)
P 		2278.2
(0.6)
P 		1495.1
(-3)
P 		1318
B 2364
(2.1)
P 		2465.9
(2.7)
P 		2525.1
(3)
P 		1395.7
(-3)
P 		1129
C 2147.5
(0.4)
P 		2644.5
(3)
P 		2270.7
(1)
P 		1518.1
(-3)
P 		1126
avr 2239.3
(0.9) 		2641.2
(3) 		2358
(1.5) 		1469.6
(-3) 		1172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1293
1 2 3 4 5 6 range
A 1545.2
(-3)
P 		2318.3
(1.5)
P 		2326.6
(1.6)
P 		2537
(2.8)
P 		2422.1
(2.2)
P 		2565.9
(3)
P 		1021
B 1484.7
(-3)
P 		2116.9
(-0)
P 		2754.7
(3)
P 		2349.2
(1.1)
P 		2590
(2.2)
P 		2568.4
(2.1)
P 		1270
C 1461.5
(-3)
P 		2188.6
(0.9)
P 		2548.5
(2.8)
P 		2298.7
(1.5)
P 		2446.8
(2.3)
P 		2583.7
(3)
P 		1122
avr 1497.1
(-3) 		2207.9
(1) 		2543.3
(2.8) 		2395
(2) 		2486.3
(2.5) 		2572.7
(3) 		1076
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 584
1 2 3 4 range
A 803.3
(3)
P 		610.6
(1)
P 		595.6
(0.9)
P 		218.9
(-3)
P 		584
B 753.8
(3)
P 		609
(1.1)
P 		585.1
(0.8)
P 		297.4
(-3)
P 		456
C 710.9
(2.1)
P 		760.3
(2.7)
P 		791.4
(3)
P 		256
(-3)
P 		535
avr 756
(3) 		660
(1.8) 		657.4
(1.8) 		257.4
(-3) 		499

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 768
1 2 3 4 5 6 range
A 284.8
(-3)
P 		824.5
(3)
P 		506.7
(-0.5)
P 		643.4
(1)
P 		730.9
(2)
P 		624.7
(0.8)
P 		540
B 516.6
(-3)
P 		704.6
(-0.9)
P 		668.9
(-1.3)
P 		622.2
(-1.8)
P 		1052.3
(3)
P 		957.7
(1.9)
P 		536
C 541.7
(-1.8)
P 		667.8
(0.1)
P 		648.6
(-0.2)
P 		462.3
(-3)
P 		791.8
(1.9)
P 		864.9
(3)
P 		403
avr 447.7
(-3) 		732.3
(1.2) 		608.1
(-0.7) 		576
(-1.1) 		858.3
(3) 		815.8
(2.4) 		411
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188727_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13905
Sequence Type Exemplar sequence
Representative Public ID R31.2 NCBI
Target Description R31.2 /REP_DB=WormBase Gene ID /WP=CE21125 /TR=Q22015 /GB=CAB00128.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin motif
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073593 NCBI Caenorhabditis elegans R31.2 (R31.2) mRNA, complete cds. 11/11 None
SNAP00000005377 ENSEMBL cdna:SNAP chromosome:CEL140:V:11925759:11926920:1 11/11 None
GENEFINDER00000005380 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11920161:11927096:1 11/11 None
R31.2 ENSEMBL cdna:known chromosome:CEL140:V:11920152:11927241:1 gene:R31.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11920160-11926920(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin motif
Ensembl R31.2
Entrez Gene 179630 Entrez gene
SwissProt Q22015 EMBL-EBI
WormBase CE21125 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00128 Hypothetical protein R31.2 [Caenorhabditis elegans] ref|NP_505994.1| R31.2 [Caenorhabditis elegans] 0.0
blast CAB00128 Hypothetical protein R31.2 [Caenorhabditis elegans] ref|NP_505994.1| R31.2 [Caenorhabditis elegans] 1.0E-132
blast CAB00128 Hypothetical protein R31.2 [Caenorhabditis elegans] ref|NP_505994.1| R31.2 [Caenorhabditis elegans] 1.0E-112
blast CAE75347 Hypothetical protein CBG23327 [Caenorhabditis briggsae] 1.0E-111
blast CAE75348 Hypothetical protein CBG23328 [Caenorhabditis briggsae] 6.0E-84
blast CAE75348 Hypothetical protein CBG23328 [Caenorhabditis briggsae] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 3.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505994.1 1 602-624
R31.2 1 602-624
SNAP00000005377 1 226-248
Sequence
Target Sequence 
>C. ELEGANS:188727_S_AT
gagcaccaactccagctgaagatctctcccattatgtgaaagagccaagcccaccagtta
gcttggccgctactgatttggattcgaataatggtgctgacgaaggaaacggagaagggc
acgatgaaccaaaattgattccactcacaactcgtcagagtctcgattcggatccgggag
atttcgagaaagttgacaaggaagaagctgccaagttagctgatacttctccagcagtcg
ctggaattgctgcagccattcctatcatatctgcccaagttgaagaggagcagaatgatc
caactgttttagaatcagaacatgaaccatcgtttgttccaccagcttctgcacaccaag
ctccatcaacaaaagccacagttgtcgaagagtcgaagcaagttccagaaggacgcgaac
ccagcgatttggccacgtggattcacaataatccagacgtcgtcagaaatgtggctgctg
cagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCACCAACTCCAGCTGAAGATCT 387 389 1358 Antisense
CTGAAGATCTCTCCCATTATGTGAA 185 239 1373 Antisense
GCTTGGCCGCTACTGATTTGGATTC 445 307 1418 Antisense
AAATTGATTCCACTCACAACTCGTC 415 115 1489 Antisense
CAGAGTCTCGATTCGGATCCGGGAG 152 207 1513 Antisense
AGCTGATACTTCTCCAGCAGTCGCT 532 81 1575 Antisense
GCAGCCATTCCTATCATATCTGCCC 127 315 1609 Antisense
CATGAACCATCGTTTGTTCCACCAG 119 211 1678 Antisense
GAAGGACGCGAACCCAGCGATTTGG 128 335 1765 Antisense
CAGCGATTTGGCCACGTGGATTCAC 74 203 1779 Antisense
GTCAGAAATGTGGCTGCTGCAGCTG 407 463 1819 Antisense
Sequence Source Affymetrix Proprietary Database