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[188720_at] peptidase

Description R09F10.1 /REP_DB=WormBase Gene ID /WP=CE07435 /TR=Q23030 /GB=AAC69091.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 80      6grp_total > 62      4grp_total > 04      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 277.9
(3)
P 		271.1
(2.5)
P 		198.1
(-3)
P 		265.4
(2.1)
P 		80
B 220.6
(-1.7)
P 		197.6
(-3)
P 		197
(-3)
P 		303.4
(3)
P 		106
C 248.9
(-2)
P 		234.1
(-3)
P 		282.5
(0.4)
P 		318.7
(3)
P 		85
avr 249.1
(-1) 		234.3
(-2.3) 		225.9
(-3) 		295.8
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 149.5
(-1.9)
P 		245.9
(1.1)
P 		265.7
(1.7)
P 		307.9
(3)
P 		158.5
(-1.6)
P 		114.7
(-3)
P 		193
B 136.5
(-3)
P 		217.3
(0.5)
P 		275.1
(3)
P 		233.9
(1.2)
P 		182.2
(-1)
P 		146.7
(-2.6)
P 		139
C 242.9
(1.9)
P 		207.5
(-1.4)
P 		254.7
(3)
P 		242.4
(1.9)
P 		243.1
(1.9)
P 		189.7
(-3)
P 		65
avr 176.3
(-1.6) 		223.6
(0.8) 		265.2
(3) 		261.4
(2.8) 		194.6
(-0.7) 		150.4
(-3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 101.2
(3)
P 		58.8
(-1.1)
P 		51.8
(-1.8)
P 		38.9
(-3)
P 		62
B 70.3
(3)
P 		48.8
(-2.2)
P 		45.7
(-3)
P 		64.6
(1.6)
P 		25
C 82.4
(0.8)
P 		67.3
(-1.2)
P 		98.5
(3)
P 		53.7
(-3)
P 		45
avr 84.6
(3) 		58.3
(-1.9) 		65.3
(-0.6) 		52.4
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 27.6
(-3)
P 		87.4
(3)
P 		57.9
(0)
P 		78.1
(2.1)
P 		47.8
(-1)
P 		27.9
(-3)
P 		60
B 47.5
(-3)
P 		72.3
(2.6)
P 		66.8
(1.4)
P 		62
(0.3)
P 		74
(3)
P 		54.7
(-1.4)
P 		27
C 90
(3)
P 		63.3
(-0.9)
P 		64.8
(-0.7)
P 		48.7
(-3)
P 		78.7
(1.4)
P 		63.5
(-0.8)
P 		41
avr 55
(-1.5) 		74.3
(3) 		63.2
(0.4) 		62.9
(0.3) 		66.8
(1.2) 		48.7
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188720_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16249
Sequence Type Exemplar sequence
Representative Public ID R09F10.1 NCBI
Target Description R09F10.1 /REP_DB=WormBase Gene ID /WP=CE07435 /TR=Q23030 /GB=AAC69091.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077007(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077007 NCBI Caenorhabditis elegans R09F10.1 (peptidase) mRNA, complete cds. 10/11 None
GENEFINDER00000002580 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8323581:8324932:1 11/11 None
SNAP00000002575 ENSEMBL cdna:SNAP chromosome:CEL140:X:8323800:8324354:1 10/11 None
R09F10.1 ENSEMBL cdna:known chromosome:CEL140:X:8323529:8324970:1 gene:R09F10.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8323798-8324931(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl R09F10.1
Entrez Gene 181087 Entrez gene
SwissProt Q23030 EMBL-EBI
WormBase CE28755 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509408 R09F10.1 [Caenorhabditis elegans] gb|AAC69091.2| Hypothetical protein R09F10.1 [Caenorhabditis elegans] 0.0
blast CAE74885 Hypothetical protein CBG22748 [Caenorhabditis briggsae] 1.0E-147
blast NP_509408 R09F10.1 [Caenorhabditis elegans] gb|AAC69091.2| Hypothetical protein R09F10.1 [Caenorhabditis elegans] 1.0E-105
blast CAE69474 Hypothetical protein CBG15672 [Caenorhabditis briggsae] 9.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 8.2E-110
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 2.5E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509408.1 1 44-66
R09F10.1 1 44-66
GENEFINDER00000002580 1 44-66
Sequence
Target Sequence 
>C. ELEGANS:188720_AT
atgttatagagtttgaagccgaagaagaaagaaatcttggattggatttagatgttaacg
agttcacagactggaccgatgaggaattgcaaaaaatggttcaagaaaataaatatacaa
aatatgattttgacacaccgaaatttgaaggaagttatttagaaactggtgttattcgcc
ctgcttcaattgattggagagaacaaggaaaattaacgccaatcaaaaatcaaggacaat
gtggatcgtgttgggcgtttgctacagttgcttctgttgaagctcagaacgcaatcaaga
aaggaaagttagtgtctctttctgaacaggaaatggtggattgtgatggaagaaacaatg
gctgcagtggaatgaatgtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTATAGAGTTTGAAGCCGAAGA 90 15 170 Antisense
GTTAACGAGTTCACAGACTGGACCG 333 439 223 Antisense
CAGACTGGACCGATGAGGAATTGCA 236 195 236 Antisense
AAAATATGATTTTGACACACCGAAA 303 131 288 Antisense
ATTCGCCCTGCTTCAATTGATTGGA 340 9 343 Antisense
GACAATGTGGATCGTGTTGGGCGTT 348 365 404 Antisense
GGCGTTTGCTACAGTTGCTTCTGTT 485 541 423 Antisense
TTGCTTCTGTTGAAGCTCAGAACGC 221 703 437 Antisense
GAAGCTCAGAACGCAATCAAGAAAG 609 341 448 Antisense
GTTAGTGTCTCTTTCTGAACAGGAA 30 447 477 Antisense
ATGGCTGCAGTGGAATGAATGTCGT 674 51 527 Antisense
Sequence Source Affymetrix Proprietary Database