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[188718_at] globin like

Description F52A8.4 /REP_DB=WormBase Gene ID /WP=CE05911 /TR=Q20638 /GB=CAA95823.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=globin like
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 41      6grp_total > 22      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 855
1 2 3 4 range
A 1047
(3)
P 		418.3
(-2)
P 		285.8
(-3)
P 		691.9
(0.2)
P 		761
B 1134.5
(3)
P 		399.3
(-2.2)
P 		279.2
(-3)
P 		900.7
(1.4)
P 		855
C 1041.8
(3)
P 		466.1
(-2.2)
P 		382.7
(-3)
P 		864.8
(1.4)
P 		659
avr 1074.4
(3) 		427.9
(-2.1) 		315.9
(-3) 		819.1
(1) 		759

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 620.7
(0.6)
P 		824.3
(3)
P 		660.2
(1)
P 		570.4
(-0.1)
P 		506.9
(-0.8)
P 		324.9
(-3)
P 		499
B 842.2
(2.3)
P 		911.4
(3)
P 		872
(2.6)
P 		569.8
(-0.5)
P 		542.7
(-0.8)
P 		331.5
(-3)
P 		580
C 929.2
(3)
P 		775.6
(1.2)
P 		588.9
(-0.9)
P 		561.4
(-1.2)
P 		515.3
(-1.8)
P 		409.6
(-3)
P 		520
avr 797.4
(2.5) 		837.1
(3) 		707
(1.4) 		567.2
(-0.4) 		521.6
(-0.9) 		355.3
(-3) 		482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 381.2
(3)
P 		90.8
(-2.7)
P 		74.7
(-3)
P 		101.3
(-2.5)
P 		307
B 361.8
(3)
P 		98.6
(-2.3)
P 		64.7
(-3)
P 		191.9
(-0.4)
P 		297
C 344.9
(3)
P 		134
(-3)
P 		133.4
(-3)
P 		145.8
(-2.6)
P 		212
avr 362.6
(3) 		107.8
(-2.6) 		90.9
(-3) 		146.3
(-1.8) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 114.4
(-2)
P 		293.2
(3)
P 		143.8
(-1.2)
P 		144.7
(-1.2)
P 		153
(-0.9)
P 		79.1
(-3)
P 		214
B 293.1
(2.7)
P 		303.4
(3)
P 		211.8
(-0.1)
P 		150.9
(-2.1)
P 		220.5
(0.2)
P 		123.6
(-3)
P 		180
C 344.4
(3)
P 		236.7
(0.2)
P 		149.9
(-2)
P 		112.9
(-3)
P 		166.8
(-1.6)
P 		137.1
(-2.4)
P 		232
avr 250.6
(2) 		277.8
(3) 		168.5
(-1) 		136.2
(-2.2) 		180.1
(-0.6) 		113.3
(-3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188718_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1714
Sequence Type Exemplar sequence
Representative Public ID F52A8.4 NCBI
Target Description F52A8.4 /REP_DB=WormBase Gene ID /WP=CE05911 /TR=Q20638 /GB=CAA95823.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=globin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059673(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059673 NCBI Caenorhabditis elegans F52A8.4 (F52A8.4) mRNA, complete cds. 11/11 None
GENEFINDER00000013998 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7347362:7353814:1 11/11 None
SNAP00000013992 ENSEMBL cdna:SNAP chromosome:CEL140:I:7351773:7353814:1 11/11 None
F52A8.4 ENSEMBL cdna:known chromosome:CEL140:I:7351032:7354079:1 gene:F52A8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7350962-7353745(+) 100.0 100.0
Public Domain and Genome References
Gene Title globin like
Ensembl F52A8.4
Entrez Gene 172485 Entrez gene
SwissProt Q20638 EMBL-EBI
WormBase CE05911 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95823 Hypothetical protein F52A8.4 [Caenorhabditis elegans] ref|NP_492074.1| F52A8.4 [Caenorhabditis elegans] 1.0E-138
blast CAE66591 Hypothetical protein CBG11915 [Caenorhabditis briggsae] 1.0E-129
blast CAA95823 Hypothetical protein F52A8.4 [Caenorhabditis elegans] ref|NP_492074.1| F52A8.4 [Caenorhabditis elegans] 1.0E-127
blast CAE66591 Hypothetical protein CBG11915 [Caenorhabditis briggsae] 1.0E-122
blast CAE66591 Hypothetical protein CBG11915 [Caenorhabditis briggsae] 1.0E-121
blast CAE65561 Hypothetical protein CBG10551 [Caenorhabditis briggsae] 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 1.6E-30
Pfam IPR000971 EMBL-EBI Globin 1.6E-30
Pfam IPR000971 EMBL-EBI Globin 1.6E-30
Sequence
Target Sequence 
>C. ELEGANS:188718_AT
tactccgacgcacgtggtcagatgagtttgacaatttgtacgagttgggatcagcaatct
attgttacatttttgatcataacccaaattgcaaacaattattcccgttcatttcgaaat
atcagggagacgagtggaaagagtcaaaagaattcaggtcgcaggctctcaaatttgtac
agacattagctcaagtggtcaaaaatatttatcatatggaaaggacggaatcgtttcttt
acatggtcggacagaagcatgtaaaatttgcggatcgaggtttcaagcatgaatattggg
atattttccaggacgctatggaatttgcattagaacaccgtctctccattatgaccgatt
tagacgataatcaaaaaagagacgcagtgacggtgtggaggacattggcactatatacaa
ctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCCGACGCACGTGGTCAGATGA 482 645 242 Antisense
GTACGAGTTGGGATCAGCAATCTAT 67 457 279 Antisense
GCAAACAATTATTCCCGTTCATTTC 355 317 332 Antisense
TTCAGGTCGCAGGCTCTCAAATTTG 196 685 394 Antisense
GAATCGTTTCTTTACATGGTCGGAC 629 327 469 Antisense
GCGGATCGAGGTTTCAAGCATGAAT 282 293 511 Antisense
ATTGGGATATTTTCCAGGACGCTAT 290 5 536 Antisense
ATTTGCATTAGAACACCGTCTCTCC 483 17 564 Antisense
CCGTCTCTCCATTATGACCGATTTA 479 265 579 Antisense
GAGACGCAGTGACGGTGTGGAGGAC 364 393 620 Antisense
GGACATTGGCACTATATACAACTGT 359 525 641 Antisense
Sequence Source Affymetrix Proprietary Database