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[188716_s_at] peroxidase

Description ZK430.8 /REP_DB=WormBase Gene ID /WP=CE05084 /TR=Q23490 /GB=AAA83575.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 41      6grp_total > 02      4grp_total > 56      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1338
1 2 3 4 range
A 726.9
(-0.8)
P 		1035.4
(0.8)
P 		1435.5
(3)
P 		328.7
(-3)
P 		1107
B 699.6
(-0.9)
P 		1125.6
(1)
P 		1563.2
(3)
P 		225.7
(-3)
P 		1338
C 695.9
(-1)
P 		1158.9
(1.3)
P 		1512.2
(3)
P 		297
(-3)
P 		1215
avr 707.5
(-0.9) 		1106.6
(1) 		1503.6
(3) 		283.8
(-3) 		1220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 549
1 2 3 4 5 6 range
A 831.1
(0.2)
P 		1047.6
(3)
P 		576.9
(-3)
P 		772.2
(-0.5)
P 		892.6
(1)
P 		653.7
(-2)
P 		471
B 866.6
(3)
P 		864.5
(3)
P 		680.3
(-1.1)
P 		863.1
(2.9)
P 		855
(2.7)
P 		596.8
(-3)
P 		270
C 705.7
(-1.7)
P 		1125.8
(3)
P 		903.3
(0.5)
P 		709.1
(-1.6)
P 		741.7
(-1.3)
P 		584.9
(-3)
P 		541
avr 801.1
(-0.2) 		1012.6
(3) 		720.2
(-1.4) 		781.5
(-0.5) 		829.8
(0.3) 		611.8
(-3) 		401
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 264.7
(1)
P 		224.8
(0.2)
P 		375.3
(3)
P 		48.1
(-3)
P 		327
B 223.1
(0.3)
P 		278
(1.4)
P 		362.2
(3)
P 		48.1
(-3)
P 		314
C 230.4
(-0.7)
P 		333.2
(0.6)
P 		527.1
(3)
P 		50.1
(-3)
P 		477
avr 239.4
(0.1) 		278.7
(0.7) 		421.5
(3) 		48.8
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 153.2
(-2.3)
P 		372.6
(3)
P 		125.6
(-3)
P 		195.8
(-1.3)
P 		269.4
(0.5)
P 		159.1
(-2.2)
P 		247
B 301.5
(1.5)
P 		287.7
(1)
P 		165.2
(-3)
P 		228.6
(-0.9)
P 		347.4
(3)
P 		222.5
(-1.1)
P 		182
C 261.6
(0.6)
P 		343.5
(3)
P 		229.9
(-0.4)
P 		142.6
(-3)
P 		240
(-0.1)
P 		195.8
(-1.4)
P 		201
avr 238.8
(-0.6) 		334.6
(3) 		173.6
(-3) 		189
(-2.4) 		285.6
(1.2) 		192.5
(-2.3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188716_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4383
Sequence Type Exemplar sequence
Representative Public ID ZK430.8 NCBI
Target Description ZK430.8 /REP_DB=WormBase Gene ID /WP=CE05084 /TR=Q23490 /GB=AAA83575.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062376 NCBI Caenorhabditis elegans ZK430.8 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000014021 ENSEMBL cdna:SNAP chromosome:CEL140:II:4397957:4404523:1 11/11 None
GENEFINDER00000014034 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4400686:4404523:1 11/11 None
ZK430.8 ENSEMBL cdna:known chromosome:CEL140:II:4392941:4404831:1 gene:ZK430.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4393019-4404522(+) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl ZK430.8
Entrez Gene 173775 Entrez gene
SwissProt Q23490 EMBL-EBI
WormBase CE05084 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83575 Hypothetical protein ZK430.8 [Caenorhabditis elegans] ref|NP_494777.1| ZK430.8 [Caenorhabditis elegans] 0.0
blast CAE60134 Hypothetical protein CBG03680 [Caenorhabditis briggsae] 0.0
blast CAE67580 Hypothetical protein CBG13113 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-5
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.0E-15
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188716_S_AT
gtgacggtgtcttcaagtccggcaagattcttttcgagggaggtgtggatccaatcattc
gtggatttatgacaactgccgtcaaacgaccacatcgtatgacgcctgcaattaccgaga
aaatgtttggaagcaccgacctcggatcgctgaacatccagagaggaagagaccacggaa
tcccatcatacaacaaaatgcgtcagttctgtggattgaaatctgccaatactttcgatg
atttcgctgacatgatcttggacagaaacttgagagccggattggcaagaaattataata
cgacaaatgacgttgatttctacgttggatcaatgttagaagatccagtaatcggaggtt
tagttggaactacattgagttgtgcaattggagaacaatttaagagagccagagatgggg
atagattctactttgaaaatcctggaatcttcacccgctcgcaaatggaagagatcaaaa
agtcatctctctccagaattatttgcgacaatgcagacaactttgaattagtatcccaag
atgctttccttctccctggatccaatctaactccatgctcaaagattccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACGGTGTCTTCAAGTCCGGCAA 395 483 1565 Antisense
GGAGGTGTGGATCCAATCATTCGTG 93 517 1603 Antisense
TGACAACTGCCGTCAAACGACCACA 615 571 1634 Antisense
ATCGTATGACGCCTGCAATTACCGA 12 35 1658 Antisense
GACCTCGGATCGCTGAACATCCAGA 369 383 1702 Antisense
AGAGACCACGGAATCCCATCATACA 356 69 1732 Antisense
GATTTCGCTGACATGATCTTGGACA 67 429 1804 Antisense
AAGTCATCTCTCTCCAGAATTATTT 454 157 2044 Antisense
TTAGTATCCCAAGATGCTTTCCTTC 355 677 2092 Antisense
CTCCCTGGATCCAATCTAACTCCAT 552 233 2116 Antisense
CTAACTCCATGCTCAAAGATTCCTA 505 227 2131 Antisense
Sequence Source Affymetrix Proprietary Database