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[188714_at] peroxidase

Description K10B4.1 /REP_DB=WormBase Gene ID /WP=CE12062 /TR=O17241 /GB=AAB71007.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_total > 09      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 4
(-3)
A 		9
(-0.3)
A 		15.3
(3)
A 		7.7
(-1)
A 		11
B 6.9
(-1.2)
A 		18.7
(3)
A 		1.8
(-3)
A 		3
(-2.6)
A 		17
C 1.4
(-3)
A 		5.4
(-2.5)
A 		17.6
(-0.8)
A 		45.7
(3)
A 		44
avr 4.1
(-3) 		11
(-0.2) 		11.6
(0.1) 		18.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 35.8
(3)
A 		5.3
(-2.4)
A 		1.6
(-3)
A 		34.4
(2.8)
A 		2
(-2.9)
A 		10.9
(-1.4)
A 		34
B 1.5
(-1.4)
A 		2.5
(0.9)
A 		3
(2.1)
A 		3.4
(3)
A 		0.8
(-3)
A 		2.2
(0.2)
A 		3
C 4.2
(-0.7)
A 		7.2
(1.7)
A 		1.5
(-2.9)
A 		3
(-1.7)
A 		1.4
(-3)
A 		8.8
(3)
A 		7
avr 13.8
(3) 		5
(-1.3) 		2
(-2.7) 		13.6
(2.9) 		1.4
(-3) 		7.3
(-0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-2.4)
A 		1.9
(-1.3)
A 		4
(3)
A 		1.1
(-3)
A 		3
B 2.2
(-0.4)
A 		4.6
(3)
A 		0.4
(-3)
A 		0.6
(-2.7)
A 		4
C 0.5
(-3)
A 		1.5
(-2.2)
A 		6.1
(1.7)
A 		7.7
(3)
A 		7
avr 1.4
(-3) 		2.7
(0.7) 		3.5
(3) 		3.1
(1.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.6
(1.5)
A 		1.9
(-1.9)
A 		0.4
(-3)
A 		8.7
(3)
A 		0.6
(-2.9)
A 		2.7
(-1.3)
A 		8
B 0.5
(-1)
A 		0.8
(2)
A 		0.7
(1)
A 		0.9
(3)
A 		0.3
(-3)
A 		0.8
(2)
A 		1
C 1.6
(-0.2)
A 		2.2
(1.2)
A 		0.4
(-3)
A 		0.6
(-2.5)
A 		0.4
(-3)
A 		3
(3)
A 		3
avr 2.9
(2) 		1.6
(-0.6) 		0.5
(-2.8) 		3.4
(3) 		0.4
(-3) 		2.2
(0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188714_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4958
Sequence Type Exemplar sequence
Representative Public ID K10B4.1 NCBI
Target Description K10B4.1 /REP_DB=WormBase Gene ID /WP=CE12062 /TR=O17241 /GB=AAB71007.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061268 NCBI Caenorhabditis elegans K10B4.1 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000039351 ENSEMBL cdna:SNAP chromosome:CEL140:II:135527:139594:1 11/11 None
GENEFINDER00000039355 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:134588:139999:1 11/11 None
K10B4.1 ENSEMBL cdna:known chromosome:CEL140:II:135466:139594:1 gene:K10B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:135465-139594(+) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl K10B4.1
Entrez Gene 187249 Entrez gene
SwissProt O17241 EMBL-EBI
WormBase CE12062 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493669 K10B4.1 [Caenorhabditis elegans] gb|AAB71007.1| Hypothetical protein K10B4.1 [Caenorhabditis elegans] 0.0
blast CAE62802 Hypothetical protein CBG06977 [Caenorhabditis briggsae] 0.0
blast CAA88973 Hypothetical protein T06D8.10 [Caenorhabditis elegans] emb|CAA88963.1| Hypothetical protein T06D8.10 [Caenorhabditis elegans] ref|NP_496407.1| T06D8.10 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 4.9E-6
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 5.1E-7
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.8E-34
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 4.9E-6
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 5.1E-7
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.8E-34
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 2.5E-65
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 4.9E-6
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 5.1E-7
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-13
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.8E-34
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188714_AT
gttgtagatttagcttccgattttttgaatatgtcgaagatttatgataatgaagctgtt
gagcagatattaggtggaatgcatggaaagcaccaaatgatgacagatcggtttgtggat
gatgcgattagaaactttttgttctcggatcgtggaagacgcggtactggcttggatttg
atttcaataaatattcaaagaggaagagatcacggtattccaccatacaatcattataga
tccttctgcggtctttcgcgtcttacatcattctactctattttttctgacataaaccaa
gacggtctgacagcaattggaaaagtctacgaatcaccggatgacattgatttgttcact
gggatagtatctgaaaagacaattccaggagggattgtaggaccaaccgctgcatgcatt
attgcagaacagttcagaagactaaagaagtgtgataggttctactatgagaatggagaa
gatcattcaaaattctcagcgagtcagctgaaagaagtcagaaaaacgtcgatgagtgca
cttatctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTAGATTTAGCTTCCGATTTTT 26 437 3028 Antisense
GAAACTTTTTGTTCTCGGATCGTGG 259 357 3158 Antisense
GGATCGTGGAAGACGCGGTACTGGC 697 511 3174 Antisense
GCGGTACTGGCTTGGATTTGATTTC 124 293 3188 Antisense
ATTATAGATCCTTCTGCGGTCTTTC 675 13 3260 Antisense
GTCTTACATCATTCTACTCTATTTT 325 469 3287 Antisense
AAGTCTACGAATCACCGGATGACAT 246 157 3350 Antisense
GGAGGGATTGTAGGACCAACCGCTG 106 515 3415 Antisense
GACCAACCGCTGCATGCATTATTGC 17 385 3428 Antisense
GATCATTCAAAATTCTCAGCGAGTC 302 421 3508 Antisense
ACGTCGATGAGTGCACTTATCTGTG 403 95 3553 Antisense
Sequence Source Affymetrix Proprietary Database