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[188711_at] peroxidase

Description ZK994.3 /REP_DB=WormBase Gene ID /WP=CE15487 /TR=O44087 /GB=AAB88610.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_total > 07      4grp_total > 54      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 228.4
(3)
P 		125.9
(-3)
A 		147.3
(-1.7)
P 		136.8
(-2.4)
A 		103
B 243.2
(3)
P 		164.6
(0.6)
P 		123.3
(-0.6)
A 		44.9
(-3)
A 		198
C 220.7
(3)
P 		162.1
(-0.1)
P 		128.2
(-1.8)
P 		105.5
(-3)
A 		115
avr 230.8
(3) 		150.9
(-0.5) 		132.9
(-1.3) 		95.7
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 178
(3)
A 		163.8
(1.7)
P 		169.8
(2.3)
P 		133
(-1.1)
A 		112
(-3)
A 		141.6
(-0.3)
P 		66
B 239.9
(3)
P 		146.2
(-1.4)
P 		150.8
(-1.2)
A 		153.4
(-1.1)
A 		113.4
(-3)
P 		149.1
(-1.3)
M 		127
C 188
(2.8)
P 		190.1
(3)
P 		122.4
(-2.8)
A 		156
(0.1)
A 		149.8
(-0.5)
P 		120.1
(-3)
P 		70
avr 202
(3) 		166.7
(0.2) 		147.7
(-1.2) 		147.5
(-1.3) 		125.1
(-3) 		136.9
(-2.1) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 83.2
(3)
P 		27.3
(-2.3)
A 		38.5
(-1.2)
P 		20
(-3)
A 		63
B 77.6
(3)
P 		40.6
(-0.3)
P 		28.6
(-1.3)
A 		9.6
(-3)
A 		68
C 73
(3)
P 		46.6
(0.1)
P 		44.7
(-0.1)
P 		17.8
(-3)
A 		55
avr 77.9
(3) 		38.2
(-0.8) 		37.3
(-0.9) 		15.8
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 32.8
(-3)
A 		58.3
(3)
P 		37
(-2)
P 		33.7
(-2.8)
A 		33.8
(-2.8)
A 		34.5
(-2.6)
P 		26
B 83.5
(3)
P 		48.7
(-1.5)
P 		36.6
(-3)
A 		40.6
(-2.5)
A 		46.1
(-1.8)
P 		55.6
(-0.6)
M 		47
C 69.7
(3)
P 		58
(1.2)
P 		31.2
(-3)
A 		31.4
(-3)
A 		48.5
(-0.3)
P 		40.2
(-1.6)
P 		39
avr 62
(3) 		55
(1.5) 		34.9
(-3) 		35.2
(-2.9) 		42.8
(-1.3) 		43.4
(-1.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11700
Sequence Type Exemplar sequence
Representative Public ID ZK994.3 NCBI
Target Description ZK994.3 /REP_DB=WormBase Gene ID /WP=CE15487 /TR=O44087 /GB=AAB88610.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072787(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072787 NCBI Caenorhabditis elegans ZK994.3 (peroxidase) mRNA, complete cds. 10/11 None
SNAP00000022129 ENSEMBL cdna:SNAP chromosome:CEL140:V:8498905:8504749:1 10/11 None
GENEFINDER00000022132 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8492698:8504749:1 10/11 None
ZK994.3 ENSEMBL cdna:known chromosome:CEL140:V:8499153:8504749:1 gene:ZK994.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8499132-8504750(+) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Gene Symbol pxn-1
Ensembl ZK994.3
Entrez Gene 191484 Entrez gene
SwissProt O44087 EMBL-EBI
WormBase CE36083 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11012.1.S1_AT similar to CG12002-PA, isoform A cfa
CANINE_2:CFAAFFX.11012.1.S1_S_AT similar to CG12002-PA, isoform A cfa
CANINE_2:CFAAFFX.11018.1.S1_AT similar to CG12002-PA, isoform A cfa
CHICKEN:GGAAFFX.3679.1.S1_AT similar to mKIAA0230 protein gga
CHICKEN:GGAAFFX.3679.1.S1_S_AT similar to mKIAA0230 protein gga
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB88610 Peroxidasin (drosophila peroxidase) homolog protein 1 [Caenorhabditis elegans] ref|NP_505188.2| ZK994.3 [Caenorhabditis elegans] 0.0
blast CAE58397 Hypothetical protein CBG01526 [Caenorhabditis briggsae] 0.0
blast CAE70782 Hypothetical protein CBG17537 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.1E-10
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.1E-10
Pfam IPR000483 EMBL-EBI Cysteine-rich flanking region, C-terminal 0.0039
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.97
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0071
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.19
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.0033
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 6.2E-94
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.2E-75
Pfam IPR000372 EMBL-EBI Cysteine-rich flanking region, N-terminal 2.5E-10
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-11
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 8.1E-10
Sequence
Target Sequence 
>C. ELEGANS:188711_AT
gagaatgggttgttcggtcccacttttgcatgtattattggcgaacaattcaggaaaatt
agagatggagatcggttctggtatgaaaaggatggagttttcacaccagaacagctgcgg
gagatcaaaaagatcacactggcaagacttttctgtgataacggggacaacattgatcga
atccagaaggacgtattcatgtacccaggaatggacaaggagaactatggaacatgtcaa
gaaacggaaatgatgaacttgagagcatggagcaaatgctgtgataatgtgtgtccgaca
atgctagatagaattcttcgaaggtgtgtaattatgaaaaattatgcaccagaaactgaa
atttcgggccgacatcgtggatcccgtctccacggatgtaatcagaacgggatttggagg
cctgaaggtgctaagtggattccacaaaatgaaatatgtactgaatgtgtttgccaggga
agccgtgtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAATGGGTTGTTCGGTCCCACTT 582 389 2524 Antisense
GGTCCCACTTTTGCATGTATTATTG 132 503 2539 Antisense
GGAGTTTTCACACCAGAACAGCTGC 551 517 2617 Antisense
GATCACACTGGCAAGACTTTTCTGT 661 421 2655 Antisense
GAAGGACGTATTCATGTACCCAGGA 163 333 2709 Antisense
AATGCTGTGATAATGTGTGTCCGAC 130 167 2798 Antisense
GTGTGTCCGACAATGCTAGATAGAA 669 485 2812 Antisense
TTTCGGGCCGACATCGTGGATCCCG 231 669 2885 Antisense
GATCCCGTCTCCACGGATGTAATCA 667 415 2903 Antisense
GAGGCCTGAAGGTGCTAAGTGGATT 576 399 2940 Antisense
GTGTTTGCCAGGGAAGCCGTGTTTG 613 483 2990 Antisense
Sequence Source Affymetrix Proprietary Database