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[188709_s_at]

Description W05B10.2 /REP_DB=WormBase Gene ID /WP=CE06545 /TR=Q23170 /GB=CAA98962.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone H3
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 746
1 2 3 4 range
A 314.8
(-2.4)
P 		320.5
(-2.4)
P 		257.2
(-3)
P 		873
(3)
P 		616
B 314.7
(-2)
P 		346.9
(-1.6)
P 		222.9
(-3)
P 		747.5
(3)
P 		525
C 382.2
(-1.9)
P 		243.8
(-3)
P 		296.4
(-2.6)
P 		968.9
(3)
P 		725
avr 337.2
(-2.2) 		303.7
(-2.6) 		258.8
(-3) 		863.1
(3) 		604

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 854
1 2 3 4 5 6 range
A 271.3
(-3)
P 		364.9
(-1.9)
P 		601.2
(0.7)
P 		527.6
(-0.1)
P 		537
(-0)
P 		804.6
(3)
P 		533
B 322.6
(-3)
P 		398.1
(-2.3)
P 		489.6
(-1.5)
P 		426.3
(-2.1)
P 		558.5
(-0.9)
P 		997.6
(3)
P 		675
C 236.9
(-3)
P 		462.7
(-1.4)
P 		414.2
(-1.8)
P 		537.7
(-0.9)
P 		570
(-0.7)
P 		1090.4
(3)
P 		854
avr 276.9
(-3) 		408.6
(-1.9) 		501.7
(-1) 		497.2
(-1.1) 		555.2
(-0.6) 		964.2
(3) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 114.6
(1.7)
P 		69.6
(-2.8)
P 		67.2
(-3)
P 		127.8
(3)
P 		61
B 100.4
(-0.3)
P 		85.7
(-1.1)
P 		51.6
(-3)
P 		159.3
(3)
P 		108
C 126.5
(0.6)
P 		70.1
(-3)
P 		103.3
(-0.9)
P 		163.4
(3)
P 		93
avr 113.8
(0.1) 		75.1
(-2.9) 		74
(-3) 		150.2
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 50
(-3)
P 		129.8
(0.3)
P 		130.9
(0.3)
P 		133.8
(0.4)
P 		162
(1.6)
P 		195.9
(3)
P 		146
B 112.2
(-3)
P 		132.5
(-2.5)
P 		118.9
(-2.8)
P 		112.9
(-3)
P 		226.9
(-0.4)
P 		372
(3)
P 		260
C 87.8
(-3)
P 		141.2
(-1.8)
P 		105.4
(-2.6)
P 		108.1
(-2.6)
P 		184.4
(-0.9)
P 		365
(3)
P 		277
avr 83.3
(-3) 		134.5
(-1.7) 		118.4
(-2.1) 		118.3
(-2.1) 		191.1
(-0.2) 		311
(3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188709_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13939
Sequence Type Exemplar sequence
Representative Public ID W05B10.2 NCBI
Target Description W05B10.2 /REP_DB=WormBase Gene ID /WP=CE06545 /TR=Q23170 /GB=CAA98962.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone H3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073762 NCBI Caenorhabditis elegans W05B10.2 (W05B10.2) mRNA, complete cds. 11/11 None
SNAP00000011550 ENSEMBL cdna:SNAP chromosome:CEL140:V:12661328:12662071:-1 11/11 None
GENEFINDER00000011555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12661328:12662071:-1 11/11 None
W05B10.2 ENSEMBL cdna:known chromosome:CEL140:V:12661258:12662071:-1 gene:W05B10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12661327-12662071(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05B10.2
Entrez Gene 179733 Entrez gene
SwissProt Q23170 EMBL-EBI
WormBase CE06545 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98962 Hypothetical protein W05B10.2 [Caenorhabditis elegans] ref|NP_506163.1| W05B10.2 [Caenorhabditis elegans] 2.0E-75
blast CAE63960 Hypothetical protein CBG08548 [Caenorhabditis briggsae] 5.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 7.1E-8
Sequence
Target Sequence 
>C. ELEGANS:188709_S_AT
tcgctcgtggcttacggatctgacagcgaaggagaagacgatgatttctttggaaaaccg
acaacagaaaaagaagaaacgacgaaaaacgcggagaaagaaaaagaagaagagagcgaa
aaaatagcggaatctgatgaaaagccaacaatctcttcatttttcttcagtggtgacgat
gataaagcaggatcaagtgattcggatgattctgaaggcgaatcagtaggacctaaaaag
aaacgacgatctggagaatcagttacagaattggacaaagaatttacaagttcaatattc
gacaacgattatgccagggaagaacgaatgaatgcccgaatgttgagtcgtcacgtggat
ctgtccgataagccaagtgaaaaagaaaggaaaaagtcaaaattcacttgcaaaaattat
ctcaaaggaaaatgtcgatttggtgacaagtgccgattttcacatccagtccacaatcga
tcttctgatgcagtcaatgaggtctcaatttcttccgaagccaaattctacacaactgaa
acgccagaagcacaggtattccactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTCGTGGCTTACGGATCTGACA 639 599 19 Antisense
AATCTCTTCATTTTTCTTCAGTGGT 33 171 168 Antisense
GAATGCCCGAATGTTGAGTCGTCAC 458 329 348 Antisense
TTGAGTCGTCACGTGGATCTGTCCG 148 705 361 Antisense
GATCTGTCCGATAAGCCAAGTGAAA 695 417 376 Antisense
GACAAGTGCCGATTTTCACATCCAG 672 363 463 Antisense
TCACATCCAGTCCACAATCGATCTT 19 629 478 Antisense
CACAATCGATCTTCTGATGCAGTCA 175 195 490 Antisense
CAATGAGGTCTCAATTTCTTCCGAA 117 183 513 Antisense
TCTTCCGAAGCCAAATTCTACACAA 664 617 529 Antisense
GCCAGAAGCACAGGTATTCCACTCG 681 279 561 Antisense
Sequence Source Affymetrix Proprietary Database