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[188705_s_at] peroxidase

Description T06D8.10 /REP_DB=WormBase Gene ID /WP=CE13311 /TR=Q22216 /GB=CAA88973.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 48      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 712
1 2 3 4 range
A 23.2
(-2.9)
A 		386.8
(0.2)
P 		716.3
(3)
P 		9.8
(-3)
A 		707
B 51.5
(-2.7)
A 		427.7
(1)
P 		636.5
(3)
P 		23.2
(-3)
A 		613
C 6.9
(-3)
A 		433.9
(0.7)
P 		701.8
(3)
P 		3.9
(-3)
A 		698
avr 27.2
(-2.9) 		416.1
(0.6) 		684.9
(3) 		12.3
(-3) 		673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 103.1
(-3)
A 		319.8
(-1.4)
P 		209.4
(-2.2)
P 		605.6
(0.8)
P 		902.7
(3)
P 		211
(-2.2)
P 		800
B 106.6
(-3)
P 		310.5
(-1.4)
P 		186
(-2.4)
P 		550.2
(0.6)
P 		855.1
(3)
P 		227.2
(-2)
P 		749
C 90.4
(-3)
A 		365.3
(-1.3)
P 		220.2
(-2.2)
P 		548.6
(-0.2)
P 		1074.5
(3)
P 		234.7
(-2.1)
P 		984
avr 100
(-3) 		331.9
(-1.4) 		205.2
(-2.3) 		568.1
(0.3) 		944.1
(3) 		224.3
(-2.1) 		844
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 8.4
(-2.8)
A 		84
(-0.3)
P 		187.2
(3)
P 		1.4
(-3)
A 		186
B 16.4
(-2.5)
A 		105.6
(1.2)
P 		147.5
(3)
P 		4.9
(-3)
A 		143
C 2.3
(-3)
A 		124.8
(0.1)
P 		244.6
(3)
P 		0.6
(-3)
A 		244
avr 9
(-2.8) 		104.8
(0.2) 		193.1
(3) 		2.3
(-3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 19
(-3)
A 		113.7
(-0.8)
P 		45.6
(-2.4)
P 		153.6
(0.2)
P 		272.4
(3)
P 		51.4
(-2.2)
P 		253
B 37.1
(-3)
P 		103.3
(-1.7)
P 		45.2
(-2.8)
P 		145.7
(-0.9)
P 		347.4
(3)
P 		84.7
(-2.1)
P 		310
C 33.5
(-3)
A 		111.5
(-1.5)
P 		56
(-2.6)
P 		110.3
(-1.5)
P 		347.7
(3)
P 		78.6
(-2.1)
P 		314
avr 29.9
(-3) 		109.5
(-1.4) 		48.9
(-2.6) 		136.5
(-0.8) 		322.5
(3) 		71.6
(-2.1) 		293
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188705_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3666
Sequence Type Exemplar sequence
Representative Public ID T06D8.10 NCBI
Target Description T06D8.10 /REP_DB=WormBase Gene ID /WP=CE13311 /TR=Q22216 /GB=CAA88973.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064006 NCBI Caenorhabditis elegans T06D8.10 (peroxidase) mRNA, complete cds. 11/11 None
T06D8.10 ENSEMBL cdna:known chromosome:CEL140:II:11240853:11247412:-1 gene:T06D8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11240970-11247409(-) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl T06D8.10
Entrez Gene 174717 Entrez gene
SwissProt Q22216 EMBL-EBI
WormBase CE13311 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638006_AT dm
DROSGENOME1:154981_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88973 Hypothetical protein T06D8.10 [Caenorhabditis elegans] emb|CAA88963.1| Hypothetical protein T06D8.10 [Caenorhabditis elegans] ref|NP_496407.1| T06D8.10 [Caenorhabditis elegans] 0.0
blast CAE59544 Hypothetical protein CBG02940 [Caenorhabditis briggsae] 0.0
blast AAB03144 Hypothetical protein C46A5.4 [Caenorhabditis elegans] ref|NP_501272.1| C46A5.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 8.8E-98
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-58
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188705_S_AT
gcaatcactttatgagtctgtcgatgatgttgacctattcccaggattggttagtgaacg
accactgcgtggtgctctcctgggaacaacaatgtcttgtatcattgctgagcagtttgg
aaggctgaaaaagtgcgatcgattctactatgagaatgataacagcgcggcaaagttcac
accaggacagttgaatgagattcggaaggtgaagcttgcatcaatcttctgctcgaacag
caagtacttgaagacaattcagccgaatgtgtttgatgtcactgatgagttaacaaatgc
tcaagttccttgcacagacattccacaagtcgacttatccctttggagggaaagaaaaac
ttgtgaaatgaatggtaaaatcattgcattgggagattctgtacatatgactccttgtgt
aacatgtacttgtactctggaaggtgttgcgtgtaatccaacaaaagtggatagctgcga
aaagctgacacacaagtatctcttgaccgacattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCACTTTATGAGTCTGTCGAT 194 323 3918 Antisense
TCGATGATGTTGACCTATTCCCAGG 424 603 3938 Antisense
TGAACGACCACTGCGTGGTGCTCTC 31 575 3972 Antisense
ATGTCTTGTATCATTGCTGAGCAGT 129 49 4009 Antisense
TAACAGCGCGGCAAAGTTCACACCA 642 639 4077 Antisense
GCTTGCATCAATCTTCTGCTCGAAC 341 307 4131 Antisense
TCAAGTTCCTTGCACAGACATTCCA 366 631 4218 Antisense
CACAAGTCGACTTATCCCTTTGGAG 648 187 4241 Antisense
GATTCTGTACATATGACTCCTTGTG 87 433 4312 Antisense
TTGTACTCTGGAAGGTGTTGCGTGT 648 707 4347 Antisense
CAAGTATCTCTTGACCGACATTGCA 537 183 4410 Antisense
Sequence Source Affymetrix Proprietary Database