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[188703_at]

Description F21A3.6 /REP_DB=WormBase Gene ID /WP=CE09520 /TR=O17824 /GB=CAB04152.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=globin like
Cluster 6grp_total > 16      4grp_total > 12      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 100.2
(-2.3)
P 		107.2
(-2.1)
A 		81.3
(-3)
A 		245.6
(3)
P 		164
B 197.2
(3)
A 		144.3
(0.1)
A 		88.7
(-3)
A 		162.5
(1.1)
P 		109
C 98.6
(-2.2)
P 		100.4
(-2.1)
A 		72.8
(-3)
A 		264.8
(3)
P 		192
avr 132
(-0.9) 		117.3
(-1.5) 		80.9
(-3) 		224.3
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 194
(3)
P 		127.8
(0)
M 		96.1
(-1.4)
P 		60.8
(-3)
A 		82.8
(-2)
A 		80.3
(-2.1)
A 		133
B 183
(3)
P 		71.7
(-3)
P 		100.4
(-1.4)
A 		70.9
(-3)
A 		115.1
(-0.6)
P 		80.7
(-2.5)
A 		112
C 107.8
(0.5)
P 		171.3
(3)
P 		96.6
(0)
A 		58.4
(-1.5)
A 		21.2
(-3)
A 		76.2
(-0.8)
A 		150
avr 161.6
(3) 		123.6
(0.7) 		97.7
(-0.9) 		63.4
(-3) 		73
(-2.4) 		79.1
(-2) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 36.5
(3)
P 		23.3
(-2.2)
A 		21.3
(-3)
A 		35.9
(2.8)
P 		15
B 62.9
(3)
A 		35.6
(-0.9)
A 		20.5
(-3)
A 		34.6
(-1)
P 		42
C 32.6
(-0.8)
P 		28.9
(-1.9)
A 		25.4
(-3)
A 		44.7
(3)
P 		19
avr 44
(3) 		29.3
(-1.1) 		22.4
(-3) 		38.4
(1.4) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 35.8
(1.1)
P 		45.5
(3)
M 		20.9
(-1.9)
P 		15.4
(-3)
A 		25
(-1.1)
A 		19.5
(-2.2)
A 		30
B 63.7
(3)
P 		23.9
(-2.3)
P 		24.4
(-2.3)
A 		18.8
(-3)
A 		46.7
(0.7)
P 		30.1
(-1.5)
A 		45
C 40
(1.4)
P 		52.3
(3)
P 		24.6
(-0.7)
A 		11.7
(-2.4)
A 		6.9
(-3)
A 		25.5
(-0.5)
A 		45
avr 46.5
(3) 		40.6
(1.9) 		23.3
(-1.5) 		15.3
(-3) 		26.2
(-0.9) 		25
(-1.1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188703_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13573
Sequence Type Exemplar sequence
Representative Public ID F21A3.6 NCBI
Target Description F21A3.6 /REP_DB=WormBase Gene ID /WP=CE09520 /TR=O17824 /GB=CAB04152.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=globin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074466
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007993 ENSEMBL cdna:SNAP chromosome:CEL140:V:15539762:15547455:-1 11/11 None
GENEFINDER00000007999 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15545745:15549138:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074466 6/11 Cross Hyb Matching Probes None
F21A3.6 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15545744-15547455(-) 84.65 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04152 Hypothetical protein F21A3.6 [Caenorhabditis elegans] ref|NP_506867.2| F21A3.6 [Caenorhabditis elegans] 1.0E-102
blast CAB04152 Hypothetical protein F21A3.6 [Caenorhabditis elegans] ref|NP_506867.2| F21A3.6 [Caenorhabditis elegans] 3.0E-92
blast CAE71628 Hypothetical protein CBG18593 [Caenorhabditis briggsae] 6.0E-52
blast CAE71628 Hypothetical protein CBG18593 [Caenorhabditis briggsae] 7.0E-52
blast CAB16501 Hypothetical protein Y57G11B.3 [Caenorhabditis elegans] ref|NP_502768.1| Y57G11B.3 [Caenorhabditis elegans] 8.0E-15
blast CAE73944 Hypothetical protein CBG21567 [Caenorhabditis briggsae] 3.0E-14
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 9.99999974737875E-5
Pfam IPR000971 EMBL-EBI Globin 2.0E-9
Pfam IPR000971 EMBL-EBI Globin 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188703_AT
aaatcttcgtccgattattctccgagtatccacgctacaagttgatttggccacaattcc
gagcaatccctgattcaagtctaatgaatgcagtagagttgagaagacacgcttcagtgt
acctgaacggccttggaaagatcatagactcgatgagagacgaggaggcattgggaaaat
caatgtcaagaatcgcagtggctcatatcaagtggaatgttcagaggaatcatgttattg
tgagtgatcgtaggacatattttgagcagggcttccatgtaggcgcaaaaatgcctgccg
tgccttgcagtggcctacgcctgcctcgcgtcgcgagccttagtgcagaaatgaggcgag
ggacgggcaggttggaggcagaggccctgatgccgcgcctacctgaagccctaatttggg
gatgtctcatgttgaagcaaacttccattgacaatcttctaaaattcgccacctttcagc
acatgattgagcctgttctggaagtcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTTCGTCCGATTATTCTCCGA 45 119 341 Antisense
ATTATTCTCCGAGTATCCACGCTAC 633 13 354 Antisense
ATTTGGCCACAATTCCGAGCAATCC 662 15 385 Antisense
TCAGTGTACCTGAACGGCCTTGGAA 74 623 454 Antisense
GAATCGCAGTGGCTCATATCAAGTG 122 329 530 Antisense
TAGGCGCAAAAATGCCTGCCGTGCC 652 649 620 Antisense
GCGTCGCGAGCCTTAGTGCAGAAAT 317 289 668 Antisense
GCGAGGGACGGGCAGGTTGGAGGCA 116 291 696 Antisense
CAATCTTCTAAAATTCGCCACCTTT 624 181 792 Antisense
GCCACCTTTCAGCACATGATTGAGC 120 279 808 Antisense
GATTGAGCCTGTTCTGGAAGTCGTG 222 435 825 Antisense
Sequence Source Affymetrix Proprietary Database