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[188700_at] 7TM chemoreceptor, srz family

Description Y49F6B.11 /REP_DB=WormBase Gene ID /WP=CE25335 /TR=Q9N4T9 /GB=AAF60737.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=collagen
Cluster 6grp_total > 70      4grp_total > 09      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 18
(-2.8)
A 		19.1
(-2.6)
A 		17.1
(-3)
A 		50
(3)
A 		33
B 7.1
(-3)
A 		15.8
(-1.8)
A 		20.2
(-1.2)
A 		49.6
(3)
P 		43
C 2.5
(-2.9)
A 		2
(-2.9)
A 		1.1
(-3)
A 		77.4
(3)
P 		76
avr 9.2
(-3) 		12.3
(-2.6) 		12.8
(-2.6) 		59
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 20.6
(0.9)
A 		1.8
(-3)
A 		30.4
(3)
A 		23.8
(1.6)
A 		23.9
(1.6)
A 		16.5
(0.1)
A 		29
B 12.3
(1.9)
A 		7.1
(-0.4)
A 		10.7
(1.2)
A 		9.3
(0.6)
A 		1.3
(-3)
A 		14.7
(3)
A 		13
C 8.2
(-1.5)
A 		22.7
(1.9)
A 		2.8
(-2.8)
A 		27.3
(3)
A 		18.2
(0.8)
A 		2.1
(-3)
A 		25
avr 13.7
(-1) 		10.5
(-3) 		14.6
(-0.4) 		20.1
(3) 		14.5
(-0.5) 		11.1
(-2.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.6
(1.6)
A 		4.2
(-3)
A 		4.5
(-2.4)
A 		7.3
(3)
A 		3
B 2.3
(-3)
A 		3.9
(-1.8)
A 		4.7
(-1.3)
A 		10.6
(3)
P 		8
C 0.8
(-2.8)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		13.1
(3)
P 		13
avr 3.2
(-2.8) 		2.9
(-3) 		3.2
(-2.8) 		10.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.8
(-0.1)
A 		0.6
(-3)
A 		6.6
(2.5)
A 		6
(1.9)
A 		7.2
(3)
A 		4
(0.1)
A 		7
B 4.3
(1.6)
A 		2.4
(-0.7)
A 		2.6
(-0.5)
A 		2.5
(-0.6)
A 		0.5
(-3)
A 		5.5
(3)
A 		5
C 3
(-0.8)
A 		6.9
(3)
A 		0.7
(-3)
A 		5.5
(1.6)
A 		5.9
(2)
A 		0.7
(-3)
A 		6
avr 3.7
(-1.3) 		3.3
(-3) 		3.3
(-3) 		4.7
(3) 		4.5
(2.1) 		3.4
(-2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188700_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4597
Sequence Type Exemplar sequence
Representative Public ID Y49F6B.11 NCBI
Target Description Y49F6B.11 /REP_DB=WormBase Gene ID /WP=CE25335 /TR=Q9N4T9 /GB=AAF60737.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062164 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-5) (srz-5) mRNA, complete cds. 11/11 None
GENEFINDER00000021117 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3509745:3514726:-1 11/11 None
Y49F6B.11 ENSEMBL cdna:known chromosome:CEL140:II:3512685:3514726:-1 gene:Y49F6B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3512683-3515478(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-5
Ensembl Y49F6B.11
Entrez Gene 190083 Entrez gene
SwissProt Q9N4T9 EMBL-EBI
WormBase CE37291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494565 Serpentine Receptor, class Z family member (srz-5) [Caenorhabditis elegans] gb|AAF60737.2| Serpentine receptor, class z protein 5 [Caenorhabditis elegans] 0.0
blast NP_494565 Serpentine Receptor, class Z family member (srz-5) [Caenorhabditis elegans] gb|AAF60737.2| Serpentine receptor, class z protein 5 [Caenorhabditis elegans] 1.0E-173
blast CAB03370 Hypothetical protein T21B4.1 [Caenorhabditis elegans] ref|NP_496664.2| Serpentine Receptor, class Z family member (srz-6) [Caenorhabditis elegans] 4.0E-38
blast CAB03370 Hypothetical protein T21B4.1 [Caenorhabditis elegans] ref|NP_496664.2| Serpentine Receptor, class Z family member (srz-6) [Caenorhabditis elegans] 3.0E-35
blast CAE56391 Hypothetical protein CBG24077 [Caenorhabditis briggsae] 2.0E-31
blast CAE56391 Hypothetical protein CBG24077 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 8.0E-12
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494565.2 7 20-42,63-85,100-122,143-165,209-231,253-275,285-307
Y49F6B.11 7 20-42,63-85,100-122,143-165,209-231,253-275,285-307
GENEFINDER00000021117 7 20-42,63-85,100-122,143-165,209-231,276-298,302-324
Sequence
Target Sequence 
>C. ELEGANS:188700_AT
ttggtcctggatcataattctgctatatctcggatttttcgctgcaaaccttggcgttgg
aattttagaaacggattttcgattttcctattcaaatttgccatttttgggtaatggttc
ttgggattttgggaatgaaagctatctggagcctggatataattttccgttttcttttga
tagtttatatatgacaatatattactatttggaagttattgctacgttatctgcattttt
atatgttccaatttttataagtcttcggaaaaaatcgaatatagcgtcagtggtggaaaa
tcagacggataggcttattatgtaccaggcaatcacaatttgtgtttcgaagtttgtaac
cttcccgtttattgtatttaacggggtaatgatcatcgatcagggatattatggattttt
gaagctggcctgcataatgctcagtgtgataaattttgcgacaaccccgcttttaattca
aatttcttatatttattgtaacaagcggaatgtgaaaatcatgcagtcactgctcacatt
caaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTCCTGGATCATAATTCTGCTA 91 709 897 Antisense
AATTCTGCTATATCTCGGATTTTTC 309 177 912 Antisense
GATTTTTCGCTGCAAACCTTGGCGT 628 427 929 Antisense
GGAGCCTGGATATAATTTTCCGTTT 633 521 1044 Antisense
GTTATTGCTACGTTATCTGCATTTT 617 447 1111 Antisense
TGTTCCAATTTTTATAAGTCTTCGG 101 563 1140 Antisense
GGCTTATTATGTACCAGGCAATCAC 655 537 1208 Antisense
TATGGATTTTTGAAGCTGGCCTGCA 597 655 1306 Antisense
GCTGGCCTGCATAATGCTCAGTGTG 671 293 1320 Antisense
TTGCGACAACCCCGCTTTTAATTCA 478 653 1352 Antisense
TGCAGTCACTGCTCACATTCAAATG 642 577 1418 Antisense
Sequence Source Affymetrix Proprietary Database