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[188699_s_at]

Description Y74C9A.4 /REP_DB=WormBase Gene ID /WP=CE24662 /CHR=1 /FEA=Sanger Annotation /DEF=DNA-binding protein (ST.LOUIS) protein_id:AAF36052.1
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 15      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 227.9
(2.9)
P 		93.2
(-3)
P 		102.7
(-2.6)
P 		230.2
(3)
P 		137
B 338.9
(3)
P 		158.2
(-3)
P 		208.3
(-1.3)
P 		315.2
(2.2)
P 		181
C 340.4
(3)
P 		211.1
(-3)
P 		235.8
(-1.9)
P 		315.1
(1.8)
P 		129
avr 302.4
(3) 		154.2
(-3) 		182.3
(-1.9) 		286.8
(2.4) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 386
1 2 3 4 5 6 range
A 111.7
(-3)
P 		289.8
(-0.2)
P 		192.4
(-1.7)
P 		247
(-0.9)
P 		202.8
(-1.6)
P 		489.8
(3)
P 		378
B 141.8
(-2.3)
P 		133.7
(-2.4)
P 		104.1
(-3)
P 		227.1
(-0.6)
P 		373.5
(2.3)
P 		406.6
(3)
P 		303
C 211.6
(-2)
P 		171.1
(-3)
P 		181.4
(-2.7)
P 		186.7
(-2.6)
P 		306.5
(0.5)
P 		403.6
(3)
P 		233
avr 155
(-3) 		198.2
(-2.1) 		159.3
(-2.9) 		220.3
(-1.6) 		294.3
(0) 		433.3
(3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 83
(3)
P 		20.2
(-3)
P 		26.9
(-2.4)
P 		33.7
(-1.7)
P 		63
B 108.1
(3)
P 		39.1
(-3)
P 		48.3
(-2.2)
P 		67.2
(-0.6)
P 		69
C 112.7
(3)
P 		60.7
(-2.2)
P 		82.2
(-0.1)
P 		53.1
(-3)
P 		60
avr 101.3
(3) 		40
(-3) 		52.5
(-1.8) 		51.3
(-1.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 20.6
(-3)
P 		103.1
(2)
P 		41.9
(-1.7)
P 		62.7
(-0.4)
P 		61.2
(-0.5)
P 		119.3
(3)
P 		99
B 49.3
(-1.9)
P 		44.5
(-2.1)
P 		25.3
(-3)
P 		60.2
(-1.3)
P 		151.8
(3)
P 		151.6
(3)
P 		127
C 78.4
(-0.5)
P 		52.2
(-2.1)
P 		46.2
(-2.5)
P 		37.5
(-3)
P 		99.2
(0.8)
P 		135.1
(3)
P 		98
avr 49.4
(-2.3) 		66.6
(-1.2) 		37.8
(-3) 		53.5
(-2) 		104.1
(1.1) 		135.3
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188699_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2583
Sequence Type Exemplar sequence
Representative Public ID Y74C9A.4 NCBI
Target Description Y74C9A.4 /REP_DB=WormBase Gene ID /WP=CE24662 /CHR=1 /FEA=Sanger Annotation /DEF=DNA-binding protein (ST.LOUIS) protein_id:AAF36052.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058261(11), NM_058262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058261 NCBI Caenorhabditis elegans Y74C9A.4b (Y74C9A.4) mRNA, complete cds. 11/11 None
NM_058262 NCBI Caenorhabditis elegans Y74C9A.4a (Y74C9A.4) mRNA, complete cds. 11/11 None
SNAP00000028622 ENSEMBL cdna:SNAP chromosome:CEL140:I:17911:20962:-1 11/11 None
GENEFINDER00000028628 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:17911:23412:-1 11/11 None
Y74C9A.4b ENSEMBL cdna:known chromosome:CEL140:I:17519:26778:-1 gene:Y74C9A.4 11/11 A 
Y74C9A.4a ENSEMBL cdna:known chromosome:CEL140:I:17911:26781:-1 gene:Y74C9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:17910-26778(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y74C9A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67240 Hypothetical protein Y74C9A.4b [Caenorhabditis elegans] ref|NP_490662.1| Y74C9A.4b [Caenorhabditis elegans] 0.0
blast AAF36052 Hypothetical protein Y74C9A.4a [Caenorhabditis elegans] ref|NP_490663.1| Y74C9A.4a [Caenorhabditis elegans] 0.0
blast AAF36052 Hypothetical protein Y74C9A.4a [Caenorhabditis elegans] ref|NP_490663.1| Y74C9A.4a [Caenorhabditis elegans] 1.0E-162
blast AAK67240 Hypothetical protein Y74C9A.4b [Caenorhabditis elegans] ref|NP_490662.1| Y74C9A.4b [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 3.6E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-9
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.4E-6
Pfam IPR000679 EMBL-EBI Zn-finger, GATA type 3.6E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.5E-9
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.4E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.4E-6
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 2.4E-6
Sequence
Target Sequence 
>C. ELEGANS:188699_S_AT
ctgccttctccgtaaaccatcaggcccctacattgtggagcaatcgattgaagctgatcc
aatcgatgagaatacgtgcagaatgacacggtgcttcgatacaccggctgcactggcatt
aattgataatatcaagagaaaacatcatatgtgtgttccacttgtttggagagttaaaca
aacgaaatgtatggaggagaacgaaattctgaatgaagaagcccgtcaacaaatgttccg
tgcaacaatgacatacagccgtgtaccaaaaggagaaattgcaaattggaagaaagatat
gatggcgttgaagggaagattcgagagatttactcctgaactagatactactgcaacaaa
tggcaatcgatctggaaaagtcaggataaattatggttggagtcctgaggaaaagaagaa
tgctattagatgtttccactggtacaaggacaatttcgagttgatcgccgagttgatggc
cacaaaaactgtggaacaaatcaaaaagttctatatggacaatgaaaagctaattttgga
gtcaatcgacacgtatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCTTCTCCGTAAACCATCAGGC 105 237 1110 Antisense
TCAGGCCCCTACATTGTGGAGCAAT 410 621 1129 Antisense
GAGCAATCGATTGAAGCTGATCCAA 401 391 1147 Antisense
GACACGGTGCTTCGATACACCGGCT 550 367 1194 Antisense
ATACACCGGCTGCACTGGCATTAAT 644 23 1208 Antisense
ACATCATATGTGTGTTCCACTTGTT 154 107 1251 Antisense
AAGCCCGTCAACAAATGTTCCGTGC 674 147 1328 Antisense
GCAACAATGACATACAGCCGTGTAC 59 319 1351 Antisense
GATTTACTCCTGAACTAGATACTAC 289 429 1436 Antisense
GTTGATCGCCGAGTTGATGGCCACA 84 437 1569 Antisense
TTTGGAGTCAATCGACACGTATCGC 570 665 1644 Antisense
Sequence Source Affymetrix Proprietary Database