[Home] | [Total List]

[188696_at] thioredoxin

Description R05H5.3 /REP_DB=WormBase Gene ID /WP=CE02290 /TR=Q21763 /GB=CAA88726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 69      6grp_total > 87      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1563
1 2 3 4 range
A 1353.6
(-3)
P 		2325.1
(0.9)
P 		2848
(3)
P 		1491.3
(-2.4)
P 		1494
B 1284.8
(-3)
P 		2424.1
(2.8)
P 		2466.1
(3)
P 		1459.3
(-2.1)
P 		1181
C 1392.1
(-3)
P 		2365.5
(3)
P 		2176.3
(1.8)
P 		1432.8
(-2.7)
P 		973
avr 1343.5
(-3) 		2371.6
(2.3) 		2496.8
(3) 		1461.1
(-2.4) 		1153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2768
1 2 3 4 5 6 range
A 1747.2
(-2.5)
P 		1551.8
(-3)
P 		1626.6
(-2.8)
P 		2228.7
(-1.1)
P 		2620.3
(-0.1)
P 		3740.8
(3)
P 		2189
B 1622.5
(-2.4)
P 		1347
(-3)
P 		1623.4
(-2.3)
P 		1817.5
(-1.9)
P 		2795.4
(0.4)
P 		3891.8
(3)
P 		2545
C 1349.3
(-3)
P 		1482.1
(-2.7)
P 		1767.5
(-2.1)
P 		2120
(-1.3)
P 		2570.1
(-0.4)
P 		4115.3
(3)
P 		2766
avr 1573
(-2.7) 		1460.3
(-3) 		1672.5
(-2.5) 		2055.4
(-1.5) 		2661.9
(-0.1) 		3916
(3) 		2456
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 540
1 2 3 4 range
A 492.9
(0.1)
P 		504.7
(0.3)
P 		744.5
(3)
P 		218.3
(-3)
P 		526
B 409.7
(-0.9)
P 		598.7
(3)
P 		571.5
(2.4)
P 		311
(-3)
P 		288
C 460.8
(-0.5)
P 		680.1
(2.1)
P 		758.5
(3)
P 		241.6
(-3)
P 		517
avr 454.5
(-0.3) 		594.5
(1.7) 		691.5
(3) 		257
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1129
1 2 3 4 5 6 range
A 322.1
(-3)
P 		551.9
(-0.7)
P 		354.2
(-2.7)
P 		565.2
(-0.5)
P 		790.7
(1.8)
P 		910.8
(3)
P 		589
B 564.6
(-2)
P 		448.3
(-2.7)
P 		394.2
(-3)
P 		481.4
(-2.5)
P 		1135.7
(1.2)
P 		1451.2
(3)
P 		1057
C 500.1
(-2.5)
P 		452.2
(-2.8)
P 		449.9
(-2.9)
P 		426.3
(-3)
P 		831.6
(-0.4)
P 		1377.6
(3)
P 		951
avr 462.3
(-2.6) 		484.1
(-2.4) 		399.4
(-3) 		491
(-2.4) 		919.3
(0.7) 		1246.5
(3) 		847
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2843
Sequence Type Exemplar sequence
Representative Public ID R05H5.3 NCBI
Target Description R05H5.3 /REP_DB=WormBase Gene ID /WP=CE02290 /TR=Q21763 /GB=CAA88726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=thioredoxin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063799 NCBI Caenorhabditis elegans R05H5.3 (thioredoxin) mRNA, complete cds. 11/11 None
SNAP00000021968 ENSEMBL cdna:SNAP chromosome:CEL140:II:10197538:10198092:1 11/11 None
GENEFINDER00000021977 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10197538:10198092:1 11/11 None
R05H5.3 ENSEMBL cdna:known chromosome:CEL140:II:10197533:10198235:1 gene:R05H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10197534-10198089(+) 100.0 100.0
Public Domain and Genome References
Gene Title thioredoxin
Ensembl R05H5.3
Entrez Gene 174582 Entrez gene
SwissProt Q21763 EMBL-EBI
WormBase CE02290 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88726 Hypothetical protein R05H5.3 [Caenorhabditis elegans] ref|NP_496200.1| R05H5.3 [Caenorhabditis elegans] 1.0E-84
blast CAE57854 Hypothetical protein CBG00891 [Caenorhabditis briggsae] 8.0E-69
blast CAE60119 Hypothetical protein CBG03662 [Caenorhabditis briggsae] 6.0E-54
Sequence
Target Sequence 
>C. ELEGANS:188696_AT
atgtccgaattgctcgctggaaccaagttgatcaaccaagacagcgaagagctcgatgct
ggcgagcacctcaagggaaaggtcgtcggactctacttctcggccagttggtgtccacca
tgccgtcaattcactccaaagctcactcgattcttcgacgagattcgcaagaagcatcca
gaattcgaggttgttttcgtgtctcgcgatcgtgaagacggtgatctccgtgaatacttc
cttgagcacatgggcgcctggactgcaattccatttggaactccaagaattcaagagctt
cttgaacaatacgaagtgaagacgatcccatcaatgcgcattgtcaagccaaacggagat
gtcgttgttcaggacgctcgcaccgagattcaggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCGAATTGCTCGCTGGAACCA 187 47 13 Antisense
GAGCTCGATGCTGGCGAGCACCTCA 365 387 61 Antisense
GGAAAGGTCGTCGGACTCTACTTCT 269 527 88 Antisense
TCCAAAGCTCACTCGATTCTTCGAC 82 589 147 Antisense
AAGCATCCAGAATTCGAGGTTGTTT 444 151 184 Antisense
TTTTCGTGTCTCGCGATCGTGAAGA 111 677 206 Antisense
TGATCTCCGTGAATACTTCCTTGAG 323 563 234 Antisense
CGCCTGGACTGCAATTCCATTTGGA 265 257 267 Antisense
GACGATCCCATCAATGCGCATTGTC 216 379 333 Antisense
AGATGTCGTTGTTCAGGACGCTCGC 217 67 369 Antisense
GACGCTCGCACCGAGATTCAGGACA 227 379 385 Antisense
Sequence Source Affymetrix Proprietary Database