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[188695_s_at]

Description Y6B3A.1 /REP_DB=WormBase Gene ID /WP=CE24576 /TR=Q9XWG5 /GB=CAB60434.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Sec7 domain
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 06      4grp_total > 62      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 265
(3)
P 		166.4
(-0.8)
P 		265.1
(3)
P 		111
(-3)
A 		154
B 342.3
(3)
P 		247.4
(-0.1)
P 		221
(-1)
P 		158.9
(-3)
P 		183
C 376.2
(3)
P 		274
(0.8)
P 		295.8
(1.2)
P 		103
(-3)
A 		273
avr 327.8
(3) 		229.3
(0.1) 		260.6
(1) 		124.3
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 405.9
(3)
P 		324
(1.1)
P 		149.9
(-3)
P 		301.7
(0.6)
P 		239.7
(-0.9)
P 		284
(0.1)
P 		256
B 327.2
(2.8)
P 		331
(3)
P 		283
(1)
P 		276.7
(0.7)
P 		187.4
(-3)
P 		195.5
(-2.7)
P 		144
C 381.4
(3)
P 		246.4
(-0.8)
P 		232.3
(-1.2)
P 		184
(-2.6)
P 		242.3
(-0.9)
P 		168
(-3)
P 		213
avr 371.5
(3) 		300.5
(0.3) 		221.7
(-2.8) 		254.1
(-1.5) 		223.1
(-2.7) 		215.8
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 96.5
(3)
P 		36.1
(-1.5)
P 		69.3
(1)
P 		16.2
(-3)
A 		80
B 109.2
(3)
P 		61.1
(-0.8)
P 		51.2
(-1.6)
P 		33.9
(-3)
P 		75
C 124.5
(3)
P 		78.8
(0.4)
P 		103.1
(1.8)
P 		17.4
(-3)
A 		107
avr 110.1
(3) 		58.7
(-0.5) 		74.5
(0.6) 		22.5
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 74.8
(0.1)
P 		115.2
(3)
P 		32.7
(-3)
P 		76.5
(0.2)
P 		72.3
(-0.1)
P 		69.1
(-0.4)
P 		83
B 113.8
(3)
P 		110.2
(2.5)
P 		68.7
(-3)
P 		73.3
(-2.4)
P 		76.2
(-2)
P 		72.9
(-2.4)
P 		45
C 141.4
(3)
P 		75.2
(-0.8)
P 		59.1
(-1.7)
P 		37
(-3)
P 		78.4
(-0.6)
P 		56.2
(-1.9)
P 		104
avr 110
(3) 		100.2
(2) 		53.5
(-3) 		62.3
(-2.1) 		75.6
(-0.7) 		66.1
(-1.7) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188695_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1153
Sequence Type Exemplar sequence
Representative Public ID Y6B3A.1 NCBI
Target Description Y6B3A.1 /REP_DB=WormBase Gene ID /WP=CE24576 /TR=Q9XWG5 /GB=CAB60434.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Sec7 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026627 NCBI Caenorhabditis elegans Y6B3A.1a (Y6B3A.1) mRNA, complete cds. 11/11 None
SNAP00000019596 ENSEMBL cdna:SNAP chromosome:CEL140:I:13612356:13617474:-1 11/11 None
GENEFINDER00000019599 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13612356:13616083:-1 11/11 None
Y6B3A.1a ENSEMBL cdna:known chromosome:CEL140:I:13612021:13634317:-1 gene:Y6B3A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173231 2 1 NM_001026627 173807_at (11), 188695_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13612286-13634248(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y6B3A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60434 Hypothetical protein Y6B3A.1a [Caenorhabditis elegans] emb|CAA21704.2| Hypothetical protein Y6B3A.1a [Caenorhabditis elegans] ref|NP_001021798.1| Y6B3A.1a [Caenorhabditis elegans] 0.0
blast CAE72590 Hypothetical protein CBG19779 [Caenorhabditis briggsae] 0.0
blast CAE66039 Hypothetical protein CBG11238 [Caenorhabditis briggsae] 0.0
blast T27476 hypothetical protein Y87G2A.x - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000904 EMBL-EBI SEC7-like domain 7.2E-85
Sequence
Target Sequence 
>C. ELEGANS:188695_S_AT
cggattgtgctcggagaccatcgggaaagtaaacgagatcttcaaatcgatggcctattc
actcaaatgtcaccacaattacttttgagcatttgtgatgctctcgcggaaagtcataca
ctggcgaaacaattcaataataataatgggcaacgtgtattgatttggaaagcacgacta
cttggatctacgaagcccaatttgatcaaccaagaaacgcgatcgctaagtgcaatgttg
gctattctattccgcctgctctacgatctccgagcccaatcgatttctgacaaaattgcg
attcgagtgttagaagtcgtttcacttgcgctcagcggctacggagaagccgaatccgac
accaggcggactgcgtatggaccagtaatttgtgaattgttgagagaatgcattgcactt
ccgaccaacttgattccggtacttgggccggagtttccattaaaactctgcgatctcgtt
gaaacggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATTGTGCTCGGAGACCATCGGG 674 241 4276 Antisense
GATGGCCTATTCACTCAAATGTCAC 194 407 4324 Antisense
GATGCTCTCGCGGAAAGTCATACAC 42 415 4372 Antisense
GAAAGCACGACTACTTGGATCTACG 453 359 4443 Antisense
AATGTTGGCTATTCTATTCCGCCTG 666 163 4509 Antisense
TCTCCGAGCCCAATCGATTTCTGAC 245 611 4542 Antisense
TGCGCTCAGCGGCTACGGAGAAGCC 34 585 4602 Antisense
GACACCAGGCGGACTGCGTATGGAC 102 369 4633 Antisense
GAGAATGCATTGCACTTCCGACCAA 98 391 4679 Antisense
TTCCGACCAACTTGATTCCGGTACT 102 697 4694 Antisense
ACTCTGCGATCTCGTTGAAACGGCC 14 99 4740 Antisense
Sequence Source Affymetrix Proprietary Database