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[188694_at] histone H3

Description F20D6.9 /REP_DB=WormBase Gene ID /WP=CE07113 /TR=Q19649 /GB=AAB37052.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=histone H3
Cluster 6grp_total > 51      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 4.8
(-3)
A 		12.8
(0.1)
A 		20.4
(3)
A 		12.9
(0.1)
A 		16
B 10.4
(-3)
A 		56.1
(3)
A 		55.7
(2.9)
A 		30.6
(-0.3)
A 		46
C 21.5
(-1.2)
A 		8.1
(-3)
A 		28.7
(-0.3)
A 		53.4
(3)
A 		45
avr 12.2
(-3) 		25.7
(0.6) 		34.9
(3) 		32.3
(2.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.8
(-2.9)
A 		6
(-2.5)
A 		39.1
(3)
A 		6
(-2.5)
A 		4
(-2.9)
A 		3.2
(-3)
A 		36
B 8.7
(3)
A 		5.6
(-2)
A 		6.7
(-0.2)
A 		5
(-3)
A 		6.7
(-0.2)
A 		7.8
(1.5)
A 		4
C 7.7
(-1.5)
A 		7.4
(-1.6)
A 		7.8
(-1.5)
A 		23.9
(3)
A 		2.3
(-3)
A 		6.8
(-1.8)
A 		22
avr 6.7
(-1.9) 		6.3
(-2.1) 		17.9
(3) 		11.6
(0.2) 		4.3
(-3) 		5.9
(-2.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-3)
A 		2.8
(-1.2)
A 		5.3
(3)
A 		1.9
(-2.7)
A 		4
B 3.3
(-3)
A 		13.9
(3)
A 		12.9
(2.4)
A 		6.5
(-1.2)
A 		11
C 7.1
(0.7)
A 		2.3
(-3)
A 		10
(3)
A 		9
(2.2)
A 		8
avr 4
(-3) 		6.3
(-0.4) 		9.4
(3) 		5.8
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.1
(-1.9)
A 		8.5
(3)
A 		1.5
(-2.4)
A 		1.2
(-2.6)
A 		0.8
(-2.9)
A 		8
B 3
(3)
A 		1.8
(-1.2)
A 		1.6
(-1.9)
A 		1.3
(-3)
A 		2.7
(1.9)
A 		2.9
(2.6)
A 		2
C 2.9
(0.2)
A 		2.3
(-0.7)
A 		2
(-1.1)
A 		4.8
(3)
A 		0.7
(-3)
A 		2.3
(-0.7)
A 		4
avr 2.2
(-1.3) 		2.1
(-1.6) 		4
(3) 		2.5
(-0.6) 		1.5
(-3) 		2
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12300
Sequence Type Exemplar sequence
Representative Public ID F20D6.9 NCBI
Target Description F20D6.9 /REP_DB=WormBase Gene ID /WP=CE07113 /TR=Q19649 /GB=AAB37052.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=histone H3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072705 NCBI Caenorhabditis elegans F20D6.9 (F20D6.9) mRNA, complete cds. 11/11 None
SNAP00000033160 ENSEMBL cdna:SNAP chromosome:CEL140:V:8179684:8180040:-1 11/11 None
F20D6.9 ENSEMBL cdna:known chromosome:CEL140:V:8179684:8180040:-1 gene:F20D6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8179684-8180041(-) 100.0 100.0
Public Domain and Genome References
Gene Title histone H3
Ensembl F20D6.9
Entrez Gene 184727 Entrez gene
SwissProt Q19649 EMBL-EBI
WormBase CE07113 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37052 Hypothetical protein F20D6.9 [Caenorhabditis elegans] ref|NP_505106.1| F20D6.9 [Caenorhabditis elegans] 6.0E-61
blast AAY90124 histone 3 [Rheum australe] 3.0E-24
blast BAD90773.1 histone 3 [Conocephalum supradecompositum] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:188694_AT
agaacctttcgggagtatgccgcaaatcgtgcactcagccagtacgatcatatccttttc
attctggtacagttgctctgcgagaaatccgaaaacaacaacagtctactgaactgctca
ttcctcgatccagattcgaacgattggtaaaggaattggcacaagacttcgtgactgact
tgatattccgaaaagacgccatagatgctctccaagcagccgtcgaagactacttggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACCTTTCGGGAGTATGCCGCAA 287 73 26 Antisense
GTATGCCGCAAATCGTGCACTCAGC 492 455 40 Antisense
GCACTCAGCCAGTACGATCATATCC 512 315 56 Antisense
GATCATATCCTTTTCATTCTGGTAC 163 421 71 Antisense
ATTCTGGTACAGTTGCTCTGCGAGA 196 11 86 Antisense
CAGTCTACTGAACTGCTCATTCCTC 409 207 127 Antisense
GCTCATTCCTCGATCCAGATTCGAA 140 301 141 Antisense
GGAATTGGCACAAGACTTCGTGACT 596 533 177 Antisense
GACTTCGTGACTGACTTGATATTCC 381 371 190 Antisense
AAAAGACGCCATAGATGCTCTCCAA 549 131 216 Antisense
GCAGCCGTCGAAGACTACTTGGTTG 276 313 241 Antisense
Sequence Source Affymetrix Proprietary Database