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[188691_s_at] peroxidase

Description F49E12.1 /REP_DB=WormBase Gene ID /WP=CE03378 /TR=Q20616 /GB=CAA91388.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster 6grp_total > 99      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 24.4
(-2.8)
M 		62.4
(3)
M 		23.3
(-3)
A 		52.6
(1.5)
A 		39
B 24.4
(-3)
A 		30.4
(-2)
A 		62.2
(3)
P 		33.9
(-1.5)
A 		38
C 43.9
(3)
A 		33.2
(-0.6)
M 		25.9
(-3)
A 		43.7
(2.9)
A 		18
avr 30.9
(-3) 		42
(2.3) 		37.1
(-0) 		43.4
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 11.2
(-3)
A 		37
(-2.4)
P 		26.7
(-2.6)
A 		40.3
(-2.3)
A 		258.6
(3)
P 		183
(1.2)
P 		247
B 34.1
(-2.7)
A 		20.2
(-3)
A 		29.9
(-2.8)
A 		31.8
(-2.8)
P 		306.5
(3)
P 		244.9
(1.7)
P 		286
C 56.4
(-2.4)
P 		60.5
(-2.4)
M 		31.4
(-3)
A 		32.8
(-3)
A 		300.5
(3)
P 		197.1
(0.7)
P 		269
avr 33.9
(-2.9) 		39.2
(-2.8) 		29.3
(-3) 		35
(-2.9) 		288.5
(3) 		208.3
(1.1) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.9
(-0.7)
M 		13.5
(3)
M 		6.1
(-3)
A 		7.7
(-1.7)
A 		7
B 7.8
(-2.5)
A 		7.5
(-2.8)
A 		14.4
(3)
P 		7.2
(-3)
A 		7
C 14.5
(3)
A 		9.5
(-1.2)
M 		9
(-1.6)
A 		7.4
(-3)
A 		7
avr 10.4
(3) 		10.2
(2.6) 		9.8
(1.8) 		7.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 2.1
(-3)
A 		13.2
(-2.1)
P 		5.8
(-2.7)
A 		10.2
(-2.4)
A 		78
(3)
P 		44.5
(0.4)
P 		76
B 11.9
(-2.7)
A 		6.7
(-3)
A 		7.3
(-3)
A 		8.4
(-2.9)
P 		124.5
(3)
P 		91.3
(1.3)
P 		118
C 20.9
(-2.1)
P 		18.5
(-2.2)
M 		8
(-2.9)
A 		6.6
(-3)
A 		97.2
(3)
P 		66
(0.9)
P 		91
avr 11.6
(-2.7) 		12.8
(-2.6) 		7
(-3) 		8.4
(-2.9) 		99.9
(3) 		67.3
(0.9) 		93
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188691_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2683
Sequence Type Exemplar sequence
Representative Public ID F49E12.1 NCBI
Target Description F49E12.1 /REP_DB=WormBase Gene ID /WP=CE03378 /TR=Q20616 /GB=CAA91388.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=peroxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063367 NCBI Caenorhabditis elegans F49E12.1 (peroxidase) mRNA, complete cds. 11/11 None
SNAP00000030001 ENSEMBL cdna:SNAP chromosome:CEL140:II:8400332:8404118:-1 11/11 None
GENEFINDER00000030012 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8398307:8404766:-1 9/11 None
F49E12.1.2 ENSEMBL cdna:known chromosome:CEL140:II:8399765:8404766:-1 gene:F49E12.1 11/11 None
F49E12.1.1 ENSEMBL cdna:known chromosome:CEL140:II:8400220:8404766:-1 gene:F49E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8400328-8404763(-) 100.0 100.0
Public Domain and Genome References
Gene Title peroxidase
Ensembl F49E12.1
Entrez Gene 174340 Entrez gene
SwissProt Q20616 EMBL-EBI
WormBase CE03378 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91388 Hypothetical protein F49E12.1 [Caenorhabditis elegans] ref|NP_495768.1| F49E12.1 [Caenorhabditis elegans] 0.0
blast CAE57659 Hypothetical protein CBG00649 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.4E-15
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188691_S_AT
gacaacttctgtgactgaaaggctctttggaggaagtgtcgatatggcagcagttaatat
tcaaagaggaagagatcatgggttgagatcttacaatgactatcgtcgattctgcaatct
ccgaccaatcactagttttaatgattggccagaagttccagatgagaatgttcgccaacg
tattggacaactgtatcgtacaccagatgatcttgatttctatgttggaggaattcttga
acaaccagcagctggaagtcttttgggagctacgtttgcatgtgtaatcggaaaacaatt
tgagagactccgtgatggagatagattctactatgagaacccaggagttttcacatcacc
tcaacttgctgagttgaagagaactactctttcatgggtattgtgtcaaactggagacaa
tatggtccgagttggtcgtcgtgcatttgacattgagaatggatcgagagcagttccatg
ctcatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACTTCTGTGACTGAAAGGCTC 646 365 1458 Antisense
GGAAGTGTCGATATGGCAGCAGTTA 40 533 1489 Antisense
GACTATCGTCGATTCTGCAATCTCC 294 373 1555 Antisense
CAATCTCCGACCAATCACTAGTTTT 400 181 1572 Antisense
GAATTCTTGAACAACCAGCAGCTGG 302 325 1688 Antisense
GAAGTCTTTTGGGAGCTACGTTTGC 242 335 1712 Antisense
GAGAACCCAGGAGTTTTCACATCAC 170 393 1792 Antisense
TTCACATCACCTCAACTTGCTGAGT 63 687 1807 Antisense
GAGAACTACTCTTTCATGGGTATTG 392 391 1836 Antisense
GAGTTGGTCGTCGTGCATTTGACAT 62 397 1886 Antisense
TCGAGAGCAGTTCCATGCTCATCGA 346 603 1921 Antisense
Sequence Source Affymetrix Proprietary Database