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[188689_at] calmodulin

Description T07G12.1 /REP_DB=WormBase Gene ID /WP=CE13387 /TR=O18058 /GB=CAB05271.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=calmodulin
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1056
1 2 3 4 range
A 1289.6
(3)
P 		433.6
(-1.9)
P 		235.9
(-3)
P 		599.3
(-0.9)
P 		1054
B 1168.7
(3)
P 		546.8
(-1.3)
P 		294.2
(-3)
P 		786.1
(0.4)
P 		875
C 1292.1
(3)
P 		484.3
(-2.2)
P 		359.1
(-3)
P 		603.6
(-1.4)
P 		933
avr 1250.1
(3) 		488.2
(-1.8) 		296.4
(-3) 		663
(-0.7) 		954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 613
1 2 3 4 5 6 range
A 751.2
(2.4)
P 		792.6
(3)
P 		529
(-0.6)
P 		434.5
(-1.9)
P 		380.6
(-2.6)
P 		351.4
(-3)
P 		441
B 964.4
(3)
P 		803.1
(1.3)
P 		559.3
(-1.3)
P 		402.2
(-3)
P 		430.7
(-2.7)
P 		457.1
(-2.4)
P 		562
C 918.9
(3)
P 		867.7
(2.4)
P 		513.3
(-1.7)
P 		426.7
(-2.7)
P 		424.8
(-2.8)
P 		405.2
(-3)
P 		514
avr 878.2
(3) 		821.1
(2.3) 		533.9
(-1.4) 		421.1
(-2.8) 		412
(-2.9) 		404.6
(-3) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 469.6
(3)
P 		94.1
(-2.5)
P 		61.7
(-3)
P 		87.7
(-2.6)
P 		408
B 372.7
(3)
P 		135.1
(-1.7)
P 		68.2
(-3)
P 		167.5
(-1)
P 		305
C 427.7
(3)
P 		139.2
(-2.3)
P 		125.2
(-2.6)
P 		101.8
(-3)
P 		326
avr 423.3
(3) 		122.8
(-2.3) 		85
(-3) 		119
(-2.4) 		338

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 138.5
(-1.4)
P 		281.9
(3)
P 		115.2
(-2.1)
P 		110.2
(-2.2)
P 		114.8
(-2.1)
P 		85.6
(-3)
P 		196
B 335.6
(3)
P 		267.3
(1.2)
P 		135.8
(-2.2)
P 		106.5
(-3)
P 		175
(-1.2)
P 		170.4
(-1.3)
P 		229
C 340.6
(3)
P 		264.8
(1.2)
P 		130.6
(-1.9)
P 		85.8
(-3)
P 		137.4
(-1.8)
P 		135.6
(-1.8)
P 		255
avr 271.6
(3) 		271.3
(3) 		127.2
(-2.1) 		100.8
(-3) 		142.4
(-1.5) 		130.5
(-2) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188689_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8399
Sequence Type Exemplar sequence
Representative Public ID T07G12.1 NCBI
Target Description T07G12.1 /REP_DB=WormBase Gene ID /WP=CE13387 /TR=O18058 /GB=CAB05271.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=calmodulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069542 NCBI Caenorhabditis elegans T07G12.1 (calmodulin) mRNA, complete cds. 11/11 None
SNAP00000026254 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10529479:10530291:1 11/11 None
GENEFINDER00000026266 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10529479:10530291:1 11/11 None
T07G12.1 ENSEMBL cdna:known chromosome:CEL140:IV:10529479:10530549:1 gene:T07G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10529484-10530297(+) 100.0 100.0
Public Domain and Genome References
Gene Title calmodulin
Gene Symbol cal-4
Ensembl T07G12.1
Entrez Gene 177945 Entrez gene
SwissProt O18058 EMBL-EBI
WormBase CE13387 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05271 Hypothetical protein T07G12.1 [Caenorhabditis elegans] ref|NP_501943.1| T07G12.1 [Caenorhabditis elegans] 4.0E-94
blast CAE63800 Hypothetical protein CBG08342 [Caenorhabditis briggsae] 1.0E-88
blast CAA93852 Hypothetical protein C18E9.1 [Caenorhabditis elegans] emb|CAD54672.1| calmodulin-like protein [Caenorhabditis elegans] ref|NP_495906.2| C18E9.1 [Caenorhabditis elegans] 5.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.8E-7
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.3E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 2.8E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.7E-8
Sequence
Target Sequence 
>C. ELEGANS:188689_AT
gtatcgccagggaaccaatcaatcggtgtgctccgatgccgatgagttcacaccagaaga
acttcaagaatttgctcaagccttcaaattgtttgacaaggatggaaacaacacaatgaa
tatcaaagaattgggtgaagcaatgcgtatgcttggtctgaatccaactgaagaagagct
tcttaacatggttaacgagtatgatgtggatggtaatggaaaaattgattttggagaatt
ttgtaaaatgatgaaggaaatgaacaaagaaactgatcaagagttgattcggcttgcttt
caaagtgtttgataaagatggaaacgggtacattactgcacaagagttcaagcatttcat
gactacaatgggtgaaagattcagtgaggaagaggttgatgagattattcgagaagttga
taaggatggcgatgaacagatcgacttagacgagttcgtcaacatggttgctccgattgt
atcggatggtaccaaaactgatccattcctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCGCCAGGGAACCAATCAATCG 36 453 15 Antisense
CAATCGGTGTGCTCCGATGCCGATG 548 181 34 Antisense
GATGCCGATGAGTTCACACCAGAAG 266 415 49 Antisense
ACTTCAAGAATTTGCTCAAGCCTTC 362 103 75 Antisense
GCAATGCGTATGCTTGGTCTGAATC 200 321 154 Antisense
AAGAGTTGATTCGGCTTGCTTTCAA 69 155 293 Antisense
GGAAACGGGTACATTACTGCACAAG 646 527 334 Antisense
GAGTTCAAGCATTTCATGACTACAA 237 399 358 Antisense
AGACGAGTTCGTCAACATGGTTGCT 348 67 462 Antisense
CAACATGGTTGCTCCGATTGTATCG 283 189 474 Antisense
GTACCAAAACTGATCCATTCCTCGA 539 457 503 Antisense
Sequence Source Affymetrix Proprietary Database