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[188687_s_at] Catalase

Description Y54G11A.5B /REP_DB=WormBase Gene ID /WP=CE22477 /TR=Q9XVZ5 /GB=CAA22457.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Catalase
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 38      6grp_total > 58      4grp_total > 0      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8591
1 2 3 4 range
A 5641.1
(-1.9)
P 		4298.2
(-3)
P 		5718.7
(-1.8)
P 		11566.7
(3)
P 		7269
B 5610.3
(-1.4)
P 		3491.3
(-3)
P 		5845.6
(-1.2)
P 		11437.7
(3)
P 		7946
C 5627.5
(-0.9)
P 		2975.3
(-3)
P 		5512.8
(-1)
P 		10597.9
(3)
P 		7623
avr 5626.3
(-1.4) 		3588.3
(-3) 		5692.4
(-1.3) 		11200.8
(3) 		7613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4661
1 2 3 4 5 6 range
A 7853.5
(0.9)
P 		5666.8
(-2.4)
P 		5358.1
(-2.8)
P 		5269.1
(-3)
P 		5246.5
(-3)
P 		9252.2
(3)
P 		4006
B 7638
(3)
P 		5259.5
(-2.4)
P 		6082.2
(-0.5)
P 		4993.4
(-3)
P 		5916.2
(-0.9)
P 		7116.1
(1.8)
P 		2645
C 7681.2
(3)
P 		4949.3
(-2.3)
P 		6063
(-0.1)
P 		4591.7
(-3)
P 		6143.3
(0)
P 		6970.9
(1.6)
P 		3090
avr 7724.2
(2.9) 		5291.9
(-2.3) 		5834.4
(-1.1) 		4951.4
(-3) 		5768.7
(-1.3) 		7779.7
(3) 		2828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1582
1 2 3 4 range
A 2053.9
(3)
P 		933
(-3)
P 		1495
(0)
P 		1693.1
(1.1)
P 		1121
B 1789.1
(0.5)
P 		862.3
(-3)
P 		1354.6
(-1.1)
P 		2437.4
(3)
P 		1575
C 1862.9
(2.7)
P 		855.4
(-3)
P 		1921.4
(3)
P 		1787
(2.2)
P 		1066
avr 1902
(2.6) 		883.6
(-3) 		1590.3
(0.9) 		1972.5
(3) 		1089

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1924
1 2 3 4 5 6 range
A 1447.7
(-1.4)
P 		2015.4
(1.7)
P 		1166.9
(-3)
P 		1336.4
(-2.1)
P 		1583.2
(-0.7)
P 		2252.6
(3)
P 		1086
B 2657.7
(3)
P 		1750.7
(-1.1)
P 		1476.9
(-2.3)
P 		1322.6
(-3)
P 		2403.7
(1.9)
P 		2653.6
(3)
P 		1335
C 2847.1
(3)
P 		1510.2
(-1.2)
P 		1543.1
(-1.1)
P 		923.4
(-3)
P 		1987.9
(0.3)
P 		2333.6
(1.4)
P 		1924
avr 2317.5
(2.5) 		1758.8
(-0.2) 		1395.6
(-2) 		1194.1
(-3) 		1991.6
(0.9) 		2413.3
(3) 		1219
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188687_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3015
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.5B NCBI
Target Description Y54G11A.5B /REP_DB=WormBase Gene ID /WP=CE22477 /TR=Q9XVZ5 /GB=CAA22457.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Catalase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027302 NCBI Caenorhabditis elegans Y54G11A.5 (Catalase) mRNA, complete cds. 11/11 None
SNAP00000023650 ENSEMBL cdna:SNAP chromosome:CEL140:II:14299547:14301910:-1 11/11 None
GENEFINDER00000023687 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14299547:14301910:-1 11/11 None
Y54G11A.5a.2 ENSEMBL cdna:known chromosome:CEL140:II:14299453:14301940:-1 gene:Y54G11A.5 11/11 None
Y54G11A.5a.1 ENSEMBL cdna:known chromosome:CEL140:II:14299453:14301917:-1 gene:Y54G11A.5 11/11 None
Y54G11A.5b ENSEMBL cdna:known chromosome:CEL140:II:14299547:14301910:-1 gene:Y54G11A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14299543-14301907(-) 100.0 100.0
Public Domain and Genome References
Gene Title Catalase
Gene Symbol ctl-2
Ensembl Y54G11A.5
Entrez Gene 175085 Entrez gene
SwissProt Q27487 EMBL-EBI
WormBase CE22476 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259517_AT catalase 1 at
CANINE:1595237_S_AT catalase cfa
CANINE:1587849_AT catalase cfa
CANINE:1582412_S_AT catalase cfa
CANINE_2:CFAAFFX.11303.1.S1_S_AT catalase cfa
CANINE:1601674_AT Catalase cfa
CANINE:1592623_AT Catalase cfa
CANINE:1595236_AT Catalase cfa
DROSOPHILA_2:1639480_AT Catalase dm
DROSGENOME1:143093_AT Catalase dm
HG-U133_PLUS_2:201432_AT catalase hs
HG-U133A_2:201432_AT catalase hs
HG-U133A:201432_AT catalase hs
HG-FOCUS:201432_AT catalase hs
HG-U133A:211922_S_AT catalase hs
HG-U133_PLUS_2:211922_S_AT catalase hs
HG-U133A_2:211922_S_AT catalase hs
HG-U95AV2:37009_AT catalase hs
HU35KSUBC:RC_AA235275_AT catalase hs
HUGENEFL:X04085_RNA1_AT catalase hs
U133_X3P:G4557013_3P_AT catalase hs
U133_X3P:G13562131_3P_S_AT catalase hs
HU35KSUBC:RC_AA034002_AT Catalase hs
U133_X3P:HS.287482.0.S1_3P_AT Catalase hs
HG-U133A_2:215573_AT Catalase hs
HG-U133_PLUS_2:215573_AT Catalase hs
HG-U133A:215573_AT Catalase hs
HG-U133_PLUS_2:238363_AT Catalase hs
HG-U133B:238363_AT Catalase hs
HG-U95C:61947_AT Catalase hs
HU35KSUBD:RC_N66025_AT Catalase hs
U133_X3P:HS.141604.0.A1_3P_AT Catalase hs
MU11KSUBA:L25069_S_AT catalase mm
MG-U74AV2:160479_AT catalase mm
MOE430A:1416430_AT catalase mm
MOUSE430A_2:1416430_AT catalase mm
MOUSE430_2:1416430_AT catalase mm
MOE430A:1416429_A_AT catalase mm
MOUSE430A_2:1416429_A_AT catalase mm
MOUSE430_2:1416429_A_AT catalase mm
MOE430B:1441413_AT Mutant catalase (Cas1) mm
MOUSE430_2:1441413_AT Mutant catalase (Cas1) mm
MG-U74AV2:161877_F_AT Mutant catalase (Cas1) mm
MU19KSUBA:TC24428_S_AT Mutant catalase (Cas1) mm
RT-U34:RC_AA926149_G_AT catalase rn
RG-U34A:RC_AA926149_G_AT catalase rn
RT-U34:M11670_AT catalase rn
RG-U34A:M11670_AT catalase rn
RAE230A:1367995_AT catalase rn
RAT230_2:1367995_AT catalase rn
RAE230B:1396168_AT Catalase rn
RAT230_2:1396168_AT Catalase rn
RT-U34:RC_AA926149_AT Catalase rn
RG-U34A:RC_AA926149_AT Catalase rn
YEAST_2:1776304_AT Catalase A, breaks down hydrogen peroxide in the peroxisomal matrix formed by acyl-CoA oxidase (Pox1p) during fatty acid beta-oxidation Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4096 catalase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22451 Hypothetical protein Y54G11A.5 [Caenorhabditis elegans] emb|CAA57665.1| catalase [Caenorhabditis elegans] ref|NP_001022473.1| Y54G11A.5 [Caenorhabditis elegans] 0.0
blast CAA74393 catalase 1 [Caenorhabditis elegans] 0.0
blast Q27487 Peroxisomal catalase 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Pfam IPR002226 EMBL-EBI Catalase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188687_S_AT
atccaaggaactacttcgctgaggttgaacaatccgccttctgcccggcccacatcgtcc
caggaatcgagttctcgccagacaagatgctccaaggacgtatcttctcgtacaccgaca
ctcatttccaccgccttggaccaaactacatccagcttccagtcaactgcccgtaccgct
cccgtgctcataacacccagcgtgatggtgcaatggcttatgacaatcagcaacatgctc
caaacttcttcccgaacagcttcaactatggaaagactcgtccggatgtcaaggatacca
cattcccagccactggagatgttgatcgttatgaaagtggagatgacaacaactatgatc
aaccccgtcaattctgggagaaggtgttggataccggggctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCAAGGAACTACTTCGCTGAGGT 23 41 1034 Antisense
CGCTGAGGTTGAACAATCCGCCTTC 432 251 1050 Antisense
GCTCCAAGGACGTATCTTCTCGTAC 3 297 1122 Antisense
GTGCTCATAACACCCAGCGTGATGG 164 479 1217 Antisense
TCAGCAACATGCTCCAAACTTCTTC 353 625 1260 Antisense
GAAAGACTCGTCCGGATGTCAAGGA 632 359 1304 Antisense
TGTCAAGGATACCACATTCCCAGCC 686 557 1320 Antisense
ACCACATTCCCAGCCACTGGAGATG 188 85 1330 Antisense
GACAACAACTATGATCAACCCCGTC 490 363 1378 Antisense
TGATCAACCCCGTCAATTCTGGGAG 230 565 1389 Antisense
AGAAGGTGTTGGATACCGGGGCTCG 570 1 1412 Antisense
Sequence Source Affymetrix Proprietary Database