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[188686_at] 7TM chemoreceptor, srb family

Description F37C12.17 /REP_DB=WormBase Gene ID /WP=CE17052 /GEN=srb-7 /TR=SW:P54142 /GB=AAC48305.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 11      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 3.5
(-3)
A 		3.6
(-3)
A 		4.4
(-2.8)
A 		32.5
(3)
A 		29
B 30.1
(3)
A 		19.3
(0.2)
A 		6.9
(-3)
A 		11.3
(-1.9)
A 		23
C 3.7
(-3)
A 		15.7
(-2.1)
A 		3.8
(-3)
A 		83.1
(3)
A 		79
avr 12.4
(-1.8) 		12.9
(-1.7) 		5
(-3) 		42.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 4.7
(-1.3)
A 		1.2
(-3)
A 		5.5
(-1)
A 		3.7
(-1.8)
A 		1.7
(-2.8)
A 		13.8
(3)
A 		13
B 6.3
(-2.3)
A 		1.3
(-3)
A 		5.5
(-2.4)
A 		43.3
(3)
A 		15.2
(-1)
A 		6.4
(-2.3)
A 		42
C 13.1
(1.5)
A 		4.6
(-1.9)
A 		16.9
(3)
A 		5.8
(-1.4)
A 		10.3
(0.4)
A 		1.9
(-3)
A 		15
avr 8
(-0.8) 		2.4
(-3) 		9.3
(-0.3) 		17.6
(3) 		9.1
(-0.4) 		7.4
(-1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-2.3)
A 		0.8
(-3)
A 		1.2
(-2.4)
A 		4.8
(3)
A 		4
B 9.6
(3)
A 		4.8
(-0.6)
A 		1.6
(-3)
A 		2.4
(-2.4)
A 		8
C 1.2
(-3)
A 		4.5
(-1.5)
A 		1.3
(-3)
A 		14
(3)
A 		13
avr 4
(-0.3) 		3.4
(-0.9) 		1.4
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-2)
A 		0.4
(-3)
A 		1.2
(-1.4)
A 		0.9
(-2)
A 		0.5
(-2.8)
A 		3.4
(3)
A 		3
B 2.2
(-2)
A 		0.4
(-3)
A 		1.3
(-2.5)
A 		11.5
(3)
A 		6.2
(0.1)
A 		2.4
(-1.9)
A 		11
C 4.8
(3)
A 		1.4
(-1.9)
A 		4.3
(2.3)
A 		1.2
(-2.1)
A 		3.3
(0.9)
A 		0.6
(-3)
A 		4
avr 2.6
(0) 		0.7
(-3) 		2.3
(-0.5) 		4.5
(3) 		3.3
(1.1) 		2.1
(-0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188686_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6672
Sequence Type Exemplar sequence
Representative Public ID F37C12.17 NCBI
Target Description F37C12.17 /REP_DB=WormBase Gene ID /WP=CE17052 /GEN=srb-7 /TR=SW:P54142 /GB=AAC48305.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066170 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-7) (srb-7) mRNA, complete cds. 11/11 None
GENEFINDER00000030614 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7176585:7178777:1 9/11 None
F37C12.17 ENSEMBL cdna:known chromosome:CEL140:III:7177454:7178777:1 gene:F37C12.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030588 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7177451-7178775(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-7
Ensembl F37C12.17
Entrez Gene 191789 Entrez gene
WormBase CE38180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48305 Serpentine receptor, class b (beta) protein 7 [Caenorhabditis elegans] ref|NP_498571.2| Serpentine Receptor, class B (beta) family member (srb-7) [Caenorhabditis elegans] 1.0E-162
blast 2123261V chemosensory receptor 1.0E-160
blast P54142 Serpentine receptor class beta-7 (Protein srb-7) 1.0E-156
blast P54142 Serpentine receptor class beta-7 (Protein srb-7) 1.0E-144
blast AAC48305 Serpentine receptor, class b (beta) protein 7 [Caenorhabditis elegans] ref|NP_498571.2| Serpentine Receptor, class B (beta) family member (srb-7) [Caenorhabditis elegans] 1.0E-144
blast 2123261V chemosensory receptor 1.0E-144
blast AAC48305 Serpentine receptor, class b (beta) protein 7 [Caenorhabditis elegans] ref|NP_498571.2| Serpentine Receptor, class B (beta) family member (srb-7) [Caenorhabditis elegans] 1.0E-134
blast 2123261V chemosensory receptor 1.0E-134
blast P54142 Serpentine receptor class beta-7 (Protein srb-7) 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 2.2E-58
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 5.7E-13
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.9E-89
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 4.9E-12
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.1E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498571.2 7 29-51,63-85,109-131,144-166,189-211,239-261,281-303
F37C12.17 6 29-51,99-121,134-156,179-201,225-247,267-289
GENEFINDER00000030614 6 62-84,99-121,142-164,177-199,258-280,300-322
Sequence
Target Sequence 
>C. ELEGANS:188686_AT
tttttgggacctattcttgccatctttttggtactactagatttatttctcattttactc
atctacaaggaagcaattgtcacaggaggttcaatatcgtttgtattcattccggcatca
atagcttcaaaaatgtacatgttttttattatgatgctgattttaaattcgttcaatttt
ttcttcagcttcttgttgcttcgaagaaacaagtccaattcaacactagctgcaaaattc
caattggaagaagtttattcttcgactaaattttccatttcggttatattcgtgcatgta
acattttttgggagttacacgactatcactattttgttaagatatttcggaagttatttt
ttcagtgatccaatagatttaggggcagtccgcggagctttcatgacgatgatttcatcg
tacaattttgcagttggagtagcatcagtatactttaactacatatatcgaataaagaaa
attatcgagatcaaaggaaatatcagaatagtggcaactggccaggcaggtgctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTTGGGACCTATTCTTGCCATCT 273 671 415 Antisense
CTTGCCATCTTTTTGGTACTACTAG 264 219 430 Antisense
TATTTCTCATTTTACTCATCTACAA 203 663 458 Antisense
TATCGTTTGTATTCATTCCGGCATC 289 657 509 Antisense
TCATTCCGGCATCAATAGCTTCAAA 152 619 521 Antisense
TTTTCTTCAGCTTCTTGTTGCTTCG 211 677 593 Antisense
GTCCAATTCAACACTAGCTGCAAAA 641 475 627 Antisense
GGGAGTTACACGACTATCACTATTT 8 497 724 Antisense
TAGATTTAGGGGCAGTCCGCGGAGC 172 651 788 Antisense
GTCCGCGGAGCTTTCATGACGATGA 497 475 802 Antisense
GGCAACTGGCCAGGCAGGTGCTATT 131 535 927 Antisense
Sequence Source Affymetrix Proprietary Database