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[188685_s_at] chitinase /// chitinase

Description R10D12.15 /REP_DB=WormBase Gene ID /WP=CE12700 /TR=P92013 /GB=CAB04842.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster 6grp_total > 0      4grp_total > 39      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 78.7
(3)
M 		5.5
(-3)
A 		4.9
(-3)
A 		57.5
(1.3)
A 		74
B 112.9
(3)
A 		9.9
(-2.9)
A 		7.7
(-3)
A 		8.8
(-2.9)
A 		105
C 92.3
(3)
M 		10.9
(-2.7)
A 		5.9
(-3)
A 		10.6
(-2.7)
A 		86
avr 94.6
(3) 		8.8
(-2.8) 		6.2
(-3) 		25.6
(-1.7) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.2
(-2.8)
A 		16.7
(3)
A 		6.6
(-1.7)
A 		3.8
(-3)
A 		4
(-2.9)
A 		8.2
(-1)
A 		13
B 4.4
(-2.6)
A 		12.8
(3)
A 		6.9
(-0.9)
A 		3.8
(-3)
A 		5.9
(-1.6)
A 		5.6
(-1.8)
A 		9
C 4.3
(-2.6)
A 		10
(0.3)
A 		6
(-1.7)
A 		15.3
(3)
A 		3.5
(-3)
A 		5
(-2.2)
A 		12
avr 4.3
(-3) 		13.2
(3) 		6.5
(-1.5) 		7.6
(-0.8) 		4.5
(-2.9) 		6.3
(-1.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 28.7
(3)
M 		1.2
(-3)
A 		1.3
(-3)
A 		8.4
(-1.4)
A 		28
B 36
(3)
A 		2.4
(-2.9)
A 		1.8
(-3)
A 		1.9
(-3)
A 		34
C 30.6
(3)
M 		3.1
(-2.7)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		29
avr 31.8
(3) 		2.2
(-2.9) 		1.7
(-3) 		4
(-2.5) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.8
(-3)
A 		5.9
(3)
A 		1.4
(-2.3)
A 		1
(-2.8)
A 		1.2
(-2.5)
A 		2
(-1.6)
A 		5
B 1.5
(-2.1)
A 		4.3
(3)
A 		1.7
(-1.7)
A 		1
(-3)
A 		2.4
(-0.5)
A 		2.1
(-1)
A 		3
C 1.6
(-1.5)
A 		3.1
(3)
A 		1.5
(-1.8)
A 		3.1
(3)
A 		1.1
(-3)
A 		1.7
(-1.2)
A 		2
avr 1.3
(-3) 		4.4
(3) 		1.5
(-2.6) 		1.7
(-2.2) 		1.6
(-2.4) 		1.9
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188685_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13915
Sequence Type Exemplar sequence
Representative Public ID R10D12.15 NCBI
Target Description R10D12.15 /REP_DB=WormBase Gene ID /WP=CE12700 /TR=P92013 /GB=CAB04842.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chitinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074071(11), NM_074072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074071 NCBI Caenorhabditis elegans R10D12.15 (chitinase) mRNA, complete cds. 11/11 None
NM_074072 NCBI Caenorhabditis elegans T26F2.1 (chitinase) mRNA, complete cds. 11/11 None
SNAP00000032930 ENSEMBL cdna:SNAP chromosome:CEL140:V:13977148:13979138:1 11/11 None
R10D12.15 ENSEMBL cdna:known chromosome:CEL140:V:13970454:13972441:-1 gene:R10D12.15 11/11 None
T26F2.1 ENSEMBL cdna:known chromosome:CEL140:V:13977151:13979138:1 gene:T26F2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021064 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032934 4/11 Cross Hyb Matching Probes None
GENEFINDER00000032935 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13977150-13979138(+) 100.0 100.0
chrV:13970453-13972441(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase
chitinase
Ensembl R10D12.15
T26F2.1
Entrez Gene 187768 Entrez gene
188942 Entrez gene
SwissProt P92013 EMBL-EBI
WormBase CE12700 Wormbase
CE12700 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6032 chitin catabolism inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4568 chitinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03255 Hypothetical protein R10D12.15 [Caenorhabditis elegans] emb|CAB04842.1| Hypothetical protein R10D12.15 [Caenorhabditis elegans] emb|CAB04840.1| Hypothetical protein T26F2.1 [Caenorhabditis elegans] ref|NP_506473.1| T26F2.1 [Caenorhabditis elegans] ref|NP_506472.1| R10D12.15 [Caenorhabditis elegans] 0.0
blast CAA96587 Hypothetical protein C08B6.4a [Caenorhabditis elegans] ref|NP_001023634.1| C08B6.4a [Caenorhabditis elegans] 0.0
blast CAH19081 Hypothetical protein C08B6.4b [Caenorhabditis elegans] ref|NP_001023635.1| C08B6.4b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 1.4E-8
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 2.9E-20
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 1.4E-8
Pfam IPR000726 EMBL-EBI Glycoside hydrolase, family 19 2.9E-20
Sequence
Target Sequence 
>C. ELEGANS:188685_S_AT
cacttgcgattatggcttctctttggttctacatgacacctcaaccaccaaaaccagcaa
tgcatgatattttaatgggaaactggaatagtggtgcacagaattcagcagctggatatg
atgggccaatctttggaccaacttcattaatcattaataatgaatgttctggagaagatt
caaaaaatccaggaggaccaggagaatcaagaagaatcaaggcattcaagtggttcaatg
gatactttggctcccctgttggacctgaacatacactgtcttgtggaaaaatgccagtga
aacttaatgcgataccccactatcagagttatcaacctgattggagttcatcctggaaac
cagaacgatgtgactgtgctcctgcaagttacggaggactcgtgtattattttgatccaa
actattacccagccagttttgttgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTGCGATTATGGCTTCTCTTTG 340 197 830 Antisense
GTGGTGCACAGAATTCAGCAGCTGG 59 489 920 Antisense
TTCAATGGATACTTTGGCTCCCCTG 465 685 1063 Antisense
GGACCTGAACATACACTGTCTTGTG 519 523 1090 Antisense
GAAACTTAATGCGATACCCCACTAT 267 355 1128 Antisense
ACCCCACTATCAGAGTTATCAACCT 92 91 1143 Antisense
GATTGGAGTTCATCCTGGAAACCAG 415 433 1168 Antisense
CAGAACGATGTGACTGTGCTCCTGC 399 205 1190 Antisense
GTGCTCCTGCAAGTTACGGAGGACT 633 477 1205 Antisense
GGAGGACTCGTGTATTATTTTGATC 628 515 1222 Antisense
TTACCCAGCCAGTTTTGTTGCTCAA 491 681 1254 Antisense
Sequence Source Affymetrix Proprietary Database