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[188682_at]

Description F12A10.6_rc /REP_DB=WormBase Gene ID /WP=CE01909 /TR=SW:Q09947 /GB=AAA68299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 47      4grp_total > 49      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.1
(3)
A 		3.2
(-3)
A 		6.7
(1.3)
A 		5.8
(0.2)
A 		5
B 2.7
(-3)
A 		20.1
(3)
A 		18.1
(2.3)
A 		4.2
(-2.5)
A 		17
C 3.7
(-1.8)
A 		9.1
(3)
A 		2.3
(-3)
A 		6.6
(0.8)
A 		7
avr 4.8
(-3) 		10.8
(3) 		9
(1.2) 		5.5
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 11.4
(3)
A 		1.5
(-3)
A 		5.1
(-0.8)
A 		1.5
(-3)
A 		1.9
(-2.8)
A 		4.2
(-1.4)
A 		10
B 10
(-0.4)
A 		3.6
(-2.9)
A 		3.3
(-3)
A 		9.7
(-0.5)
A 		3.5
(-2.9)
A 		18.7
(3)
A 		15
C 5.7
(-2.6)
A 		35.9
(3)
A 		6.3
(-2.5)
A 		7.9
(-2.2)
A 		3.4
(-3)
A 		21.2
(0.3)
A 		33
avr 9
(0.1) 		13.7
(2.5) 		4.9
(-2) 		6.4
(-1.2) 		2.9
(-3) 		14.7
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3
(3)
A 		0.7
(-3)
A 		1.8
(-0.1)
A 		0.8
(-2.7)
A 		2
B 0.9
(-3)
A 		5
(3)
A 		4.2
(1.8)
A 		0.9
(-3)
A 		4
C 1.2
(-1.7)
A 		2.6
(3)
A 		0.8
(-3)
A 		1.1
(-2)
A 		2
avr 1.7
(-0.5) 		2.8
(3) 		2.3
(1.4) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.1
(3)
A 		0.5
(-2.6)
A 		1.1
(-0.5)
A 		0.4
(-3)
A 		0.6
(-2.3)
A 		1
(-0.9)
A 		2
B 3.5
(-0.4)
A 		1.2
(-2.6)
A 		0.8
(-3)
A 		2.6
(-1.3)
A 		1.4
(-2.4)
A 		7
(3)
A 		6
C 2.1
(-2.4)
A 		11
(3)
A 		1.6
(-2.7)
A 		1.6
(-2.7)
A 		1.1
(-3)
A 		7.1
(0.6)
A 		10
avr 2.6
(-0.6) 		4.2
(1.8) 		1.2
(-2.7) 		1.5
(-2.3) 		1
(-3) 		5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188682_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28115
Sequence Type Exemplar sequence
Representative Public ID F12A10.6 NCBI
Target Description F12A10.6_rc /REP_DB=WormBase Gene ID /WP=CE01909 /TR=SW:Q09947 /GB=AAA68299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F12A10.6
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F12A10.6 F12A10.6_rc /REP_DB=WormBase Gene ID /WP=CE01909 /TR=SW:Q09947 /GB=AAA68299.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062645 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5494052-5494473(+) 43.39 100.0
Public Domain and Genome References
Ensembl F12A10.6
Sequence
Target Sequence 
>C. ELEGANS:188682_AT
ttggcaatattagatgaaacgttttctaaaatattatgaaaattagaggtgggcggcaaa
cgattttttccggcaaatcggcaaattgctggaattgaattttccggcaaatcggcaaat
tgccggaattgaaatttccaacaaatcggcaaattgccggaattgaaaattttggccgct
cccaccatttcaacagcttgccggactttctctttatcccttttacttccgttcaaatta
tgaccgatgcgtttcgcgactgtgtgcaatttgctgatgtcgtgacgctccggatcggct
agcatctgcaactgtgaaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAATATTAGATGAAACGTTTT 38 697 20 Antisense
GAAAATTAGAGGTGGGCGGCAAACG 492 351 57 Antisense
GAATTGAAAATTTTGGCCGCTCCCA 562 321 179 Antisense
TTCCGTTCAAATTATGACCGATGCG 556 697 246 Antisense
TATGACCGATGCGTTTCGCGACTGT 250 657 258 Antisense
ACCGATGCGTTTCGCGACTGTGTGC 208 89 262 Antisense
GCGTTTCGCGACTGTGTGCAATTTG 407 291 268 Antisense
TTTCGCGACTGTGTGCAATTTGCTG 196 669 271 Antisense
GCAATTTGCTGATGTCGTGACGCTC 156 323 285 Antisense
GATCGGCTAGCATCTGCAACTGTGA 251 419 312 Antisense
GCTAGCATCTGCAACTGTGAAAGTT 193 301 317 Antisense
Sequence Source Affymetrix Proprietary Database